Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01937 ATGGGGCATCCAATCGAGACGCTCATTAGACTCGCATTAGTGAAAATAATAGTCATCTTATCAGCGGCTTTTGTAGTCGTATCGGCCACAACGAACGCAACCGTGACAGTAGCTTCTCAAGCCTTACCCGGGTGCGACGAATGGTGCGGCGACGTGCAGATTCCTTATCCATTCGGGATGAAAGAAGGATGTTATCTAAATAATGAAACATTCTTACTTCGATGTTCTCCAACAGCTGATAATCCAAATGTTTCAAAGCCATTTCTAAGCCCTCAACGCCCCGAAATGGTTACAGACATATCCATTATCTCGGGGGAGATTAAAGTGTGGACCCTGGTGGCGCAAGAATGCCACTCGCCAGATACTGCTCTCAATGATTTTACCAATTTCGGTATTGATGTACCTACCTACACTATTTCCCATACCAAAAACAAGTTCATCGTGATGGGATGCGATACGATCGCTCTTTTTTCAGGGAAAGGCGTAAAAGTGCAATTATTCAAAACTGCATGTGTGGCGTTCTGTGATAACATTGAATCGGTAAAAGATGGGGCTTGCTCTGGTAATGGGTGTTGTCAGCTGGACCTTCCTAGTGGGCTTGATTCAATAGAGTTCTCGGTCGGCAGTTTAAGCAATCACACTAATGTGTCGAGTTTCAATCCTTGTGGGTATGCGTTTGTTACAGAACAAGATAGCTTCGACTTCTCTTCAAAGTATATTCGAAATTTTCCTACAGAAACAATTCCATTAGTGCTTGATTGGGCCATTAGTAATGATACTTGTGTGACGGCTAAGGACAAAACTAATTGTGTTTGTGGCAAAAATAGCTTCAAGGTTGACTTACTTGATGATCCATCTAGATATCGTTGCCGGTGCTTGCATGGCTTTGAGGGGAATCCATATCTCCCCGATGGTTGTCAAGATATAGATGAGTGCGAGGACGAGAGTCTTAATGACTGCAGGTTTGAGTGTGTTAATACAATAGGAAACTATACATGCAATTGCCCAAAAGACTCAAAAGGAGATGGAAGGCTTCAAGGAGATGGTTGCACCCGAAACTCCAAGTCTTTCGTTCAAATCATTGTTGGAGTTACTGTGGGGTTCACAGTTTTAGTAATTGGGAGTGCATGGTTATACTTGGGTTACAAAAAGTGGAAGTTCCTTAAACTGAAGGAGAAGTTTTTTCAGAAAAATGGTGGATTGATGCTTCAACAGCATCTTTCTCAATGGCAAGCATCCCCTGATTTGGTTAGAATTTTCACTCAAGAGGAGTTAGACAAGGCTACAAACAAGTACGACGACAGTGCAGTGGTTGGAAAAGGTGGCTTTGGTACTGTTTACAAAGGAGTCTTAGACGATGGTTCCGTACTTGCAATCAAGAAATCAAAATTAGTAGACCAATCTCAAACTGACCAATTCATTAACGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAACGTGGTCAAGCTCTTGGGATGCTGTCTAGAGACAGAAGTTCCATTGTTGGTGTACGAGTTCATCAGCAACGGTACGCTCTACGAATACGTCCATGACAAAACAAATGGCCGCAATTTTCTTTCGTGGGAAGCTCGTTTGAGAATAGCTGCAGAAACTGCTGGGGTGATTTCATATTTGCATTCGTCTGCTTCCACTCCAATTATCCATAGAGATATCAAGACAACTAACATACTTTTAGACCATAATTACACTGCAAAGGTATCTGATTTCGGTGCATCCAAATTGGTTCCGATGGATCAAACTCAGTTATCAACGATGGTGCAAGGGACTCTCGGATATTTAGACCCAGAATACTTATTAACCAGCGAGTTGACAGATAAGAGCGATGTGTATAGTTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAAGGGCCAGAAGCGGAGAGGAACCTAGCCATGTACGTTATGTGTGCAATGAAGGAAGATCGTTTGGAAGAAGTTGTGGAAAAGGGAATGGCGACAAATGCGAACATTCAGCAAATAAAAGAAGCCGCGAAGTTAGCAACAACGTGTTTAAGAATAAAGGGGGAGGAGCGGCCTAGCATGAAGGAGGTGGCTATGGAGTTGGAGGGGCTGAGAGGGTTGAATGAGGCTAATGAGAAATTAGAGAGCAAAGGAGAGACAATGGTAGGTTATTGGGTGCAATCCGATGGAGCTTTACAATCCTCATCCAACCAGTTTAGTGCGAGTGGGAGCACAAATATTGTGGATGATAGTATGAAGGTTCACATTTTGCCGCTGATCCATGATGGAAGATGA 2301 43.02 MGHPIETLIRLALVKIIVILSAAFVVVSATTNATVTVASQALPGCDEWCGDVQIPYPFGMKEGCYLNNETFLLRCSPTADNPNVSKPFLSPQRPEMVTDISIISGEIKVWTLVAQECHSPDTALNDFTNFGIDVPTYTISHTKNKFIVMGCDTIALFSGKGVKVQLFKTACVAFCDNIESVKDGACSGNGCCQLDLPSGLDSIEFSVGSLSNHTNVSSFNPCGYAFVTEQDSFDFSSKYIRNFPTETIPLVLDWAISNDTCVTAKDKTNCVCGKNSFKVDLLDDPSRYRCRCLHGFEGNPYLPDGCQDIDECEDESLNDCRFECVNTIGNYTCNCPKDSKGDGRLQGDGCTRNSKSFVQIIVGVTVGFTVLVIGSAWLYLGYKKWKFLKLKEKFFQKNGGLMLQQHLSQWQASPDLVRIFTQEELDKATNKYDDSAVVGKGGFGTVYKGVLDDGSVLAIKKSKLVDQSQTDQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFISNGTLYEYVHDKTNGRNFLSWEARLRIAAETAGVISYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTDKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVMCAMKEDRLEEVVEKGMATNANIQQIKEAAKLATTCLRIKGEERPSMKEVAMELEGLRGLNEANEKLESKGETMVGYWVQSDGALQSSSNQFSASGSTNIVDDSMKVHILPLIHDGR* 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17460747 17463743 - CsaV3_6G031250.1 Csa06g01937 533564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01937 766 Gene3D Phosphorylase Kinase; domain 1 398 507 - -
Csa06g01937 766 ProSiteProfiles Protein kinase domain profile. 432 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01937 766 SMART serkin_6 432 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01937 766 SMART egfca_6 308 351 IPR001881 GO:0005509
Csa06g01937 766 Gene3D Transferase(Phosphotransferase) domain 1 508 727 - -
Csa06g01937 766 ProSitePatterns Protein kinases ATP-binding region signature. 438 461 IPR017441 GO:0005524
Csa06g01937 766 ProSitePatterns Calcium-binding EGF-like domain signature. 308 333 IPR018097 GO:0005509
Csa06g01937 766 Pfam Protein kinase domain 432 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01937 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 26 710 - -
Csa06g01937 766 Gene3D Plasmodium vivax P25 domain 251 356 - -
Csa06g01937 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 710 IPR045274 GO:0007166
Csa06g01937 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Csa06g01937 766 CDD STKc_IRAK 438 706 - -
Csa06g01937 766 SUPERFAMILY Protein kinase-like (PK-like) 411 703 IPR011009 -
Csa06g01937 766 SUPERFAMILY EGF/Laminin 307 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01937 Csa-Chr6:17460747 Csa06g01942 Csa-Chr6:17564988 0 dispersed
Csa06g01935 Csa-Chr6:17444878 Csa06g01937 Csa-Chr6:17460747 0 proximal
Csa06g01937 Csa-Chr6:17460747 Csa06g01939 Csa-Chr6:17512737 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78377 PF00069 Pkinase 2.00E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01937 - - csv:101209870 1506.5