Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01939 ATGAAACGATGGACGAATACGGTCATAAGAGTTGTAGTAATCATACTATCAACCGCCATAGTAGTAGCTTCCTCACAAGCTTTACCCGACTGTGACGAATGGTGCGGCGACGTACAAATTCCATATCCATTCGGAGTGAAACAAGGATGTTATCTCAACCAAACATTCTCAATTACATGCAACAAAACCGTTAGTCCTCCAAAGGCATTTCTAATGAACACCAACATCAGCGTTACTAATATATCACTCAACGGTGAGCTTCACATATTGCAACCCATAGTGAGAGATTGCTACGAGCAAGGGATAGTAATTGGTTCATCTGTCCCAACCGTAACCGATCTTTTGGTACCCGCGATGTTCCCAATTGCTGATGGGAAAAACAAGTTCATAGCCATTGGTTGTGACACATTTGGTTTAATTGGTGGAGAGTTAAATGGGAGTGGTTATGTAAGTGGGTGCATTTCCATGTGCTTAAACGAGAGTATGATTGGTAATGATACGTGTTTGGGTAATGGCTGTTGTGAGTTGGAGATTCCTAATGAGTTGATGAATTTGAAATTGTTAGTAGGTAGTTTTTTTAATCATAGTTCGGTGAAGGATTTTAATCCGTGTGGGTATGCTTTTGTTGTTGGAAATGAGGGGTTTGAGTTTGATTCGAAGTATATTAGGAGTTTTCAAGATGTGGAAGTTGAGGTTGTGGTTGGTTGGGCTATTGGAAATGGATCTAATTATGTGTGCGGATTAAATAGTAAAAGGAATTATAGCTTCTCTAATGATGGACATGAATTTCGTTGCCAATGCTTGGAGGGTTTCCAAGGAAATCCATATCTCCCTCAAGGTTGTCAAGATATAGATGAATGCAAGGATGAAACACTGAATCAGTGTAAATACAACAGCAAGTGTGTTAACACAATAGGAAACTATACATGCAAATGTCCTAAAAACTTTAAAGGAGATGGAAGAAATGAGGGAGTAGGCTGCACTCGAGATTCTAAGACATTCATTCCCATCATAATCGGGGTTGGAGTCGGGTTCACAGTTTTCGTAATTGGTAGCACTTGGATATTTCTGGGTTACAAAAAGTGGAAGTTCATCAAAAGGAAAGAGAAATTTTTTGAAGAAAATGGAGGTTTCGTACTCCAGCGACAACTTTCTCAATGGCAATCCCCAAATGAAATGGTCAGAGTTTTTACTCAAGAAGAGTTGGAGAAGGCCACTAAACACTACGACAATAGCACTATTGTTGGTAAAGGTGGGTATGGTACAGTTTACAAAGGGGTCTTAGAGGATGGTTTGACAGTGGCAATCAAGAAATCAAAATTTATAGACCAATCACAAACTGACCAATTCATTAACGAAGTGATTGTTTTGTCTCAAATCAATCATCGCAACGTGGTTAGACTTTTGGGGTGTTGTTTAGAGACACAAGTTCCATTGTTGGTGTATGAGTTTATAACCAATGGCACCCTTTTTGAACACATCCATGACAAAACCAAGTATTCTTCTCTTTCATGGGAAGCTCGTTTCAAAATAGCATTGGAGACAGCAGGTGTGCTTTCATATTTACATTCTTCAGCTTCCACTCCAATTATACATAGAGATATCAAGACGACAAACATACTTCTAGATGAAAATTACACTGCAAAGGTCTCTGATTTTGGAACGTCGAAGTTGGTTCCAATGGATCAAACACAACTATCCACGATGGTGCAAGGGACATTAGGGTATTTAGATCCAGAGTACTTGTTGACAAGTGAGTTGACGGAGAAGAGCGACGTATATAGCTTTGGAATAGTGTTGTTAGAGCTTATAACGGGGAAGAAGGCAGTGTGTTTTGATGGGCCAGAAGAGGAAAGGAATTTAGCAATGTATGTGCTTTGTGCAATGAAGGAAGATCGGTTGGAAGAAGTTGTGGAGAAGCGGATAATGGTGAAAGAGGCAAATTTTGAGGAAATTAAACAAGTGGCCAAAGTAGCAAAGAAATGTTTGAGAATTAAAGGGGAAGAGCGACCCAACATGAAGGAAGTGGCTATTGAGTTAGAGGGAGTACGATTAATGCAAGTTGAACATTCATGGGTTAATAATAATAATTTGTCCAACACAGAAGAAATGGTATGTTTCTTGGATGTTGAAGCTTCAGACTCAAACCATTTTGCTCTGAGTGGAACTATGCATACCGTTGGGGATAACATGAAAGCTCGAACGATTTTGTCAAACATCCGCCATGGCAGGTGA 2235 39.64 MKRWTNTVIRVVVIILSTAIVVASSQALPDCDEWCGDVQIPYPFGVKQGCYLNQTFSITCNKTVSPPKAFLMNTNISVTNISLNGELHILQPIVRDCYEQGIVIGSSVPTVTDLLVPAMFPIADGKNKFIAIGCDTFGLIGGELNGSGYVSGCISMCLNESMIGNDTCLGNGCCELEIPNELMNLKLLVGSFFNHSSVKDFNPCGYAFVVGNEGFEFDSKYIRSFQDVEVEVVVGWAIGNGSNYVCGLNSKRNYSFSNDGHEFRCQCLEGFQGNPYLPQGCQDIDECKDETLNQCKYNSKCVNTIGNYTCKCPKNFKGDGRNEGVGCTRDSKTFIPIIIGVGVGFTVFVIGSTWIFLGYKKWKFIKRKEKFFEENGGFVLQRQLSQWQSPNEMVRVFTQEELEKATKHYDNSTIVGKGGYGTVYKGVLEDGLTVAIKKSKFIDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFITNGTLFEHIHDKTKYSSLSWEARFKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDENYTAKVSDFGTSKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVCFDGPEEERNLAMYVLCAMKEDRLEEVVEKRIMVKEANFEEIKQVAKVAKKCLRIKGEERPNMKEVAIELEGVRLMQVEHSWVNNNNLSNTEEMVCFLDVEASDSNHFALSGTMHTVGDNMKARTILSNIRHGR* 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17512737 17517981 + CsaV3_6G031270.1 Csa06g01939 533566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01939 744 SMART serkin_6 409 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01939 744 CDD STKc_IRAK 415 682 - -
Csa06g01939 744 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Csa06g01939 744 ProSiteProfiles EGF-like domain profile. 283 322 IPR000742 -
Csa06g01939 744 CDD EGF_CA 283 319 - -
Csa06g01939 744 SUPERFAMILY EGF/Laminin 282 321 - -
Csa06g01939 744 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 301 312 IPR000152 -
Csa06g01939 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Csa06g01939 744 SMART egfca_6 283 328 IPR001881 GO:0005509
Csa06g01939 744 ProSitePatterns Calcium-binding EGF-like domain signature. 283 310 IPR018097 GO:0005509
Csa06g01939 744 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 703 IPR045274 GO:0007166
Csa06g01939 744 Gene3D Transferase(Phosphotransferase) domain 1 485 705 - -
Csa06g01939 744 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 13 703 - -
Csa06g01939 744 ProSiteProfiles Protein kinase domain profile. 409 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01939 744 Gene3D Laminin 243 284 - -
Csa06g01939 744 Gene3D Laminin 285 323 - -
Csa06g01939 744 Gene3D Phosphorylase Kinase; domain 1 381 484 - -
Csa06g01939 744 Pfam Wall-associated receptor kinase galacturonan-binding 31 85 IPR025287 GO:0030247
Csa06g01939 744 Pfam Protein kinase domain 409 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01939 744 Pfam Calcium-binding EGF domain 283 319 IPR001881 GO:0005509
Csa06g01939 744 SUPERFAMILY Protein kinase-like (PK-like) 387 680 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01935 Csa-Chr6:17444878 Csa06g01939 Csa-Chr6:17512737 0 dispersed
Csa06g01939 Csa-Chr6:17512737 Csa06g01942 Csa-Chr6:17564988 0 dispersed
Csa06g01937 Csa-Chr6:17460747 Csa06g01939 Csa-Chr6:17512737 0 proximal
Csa06g01939 Csa-Chr6:17512737 Csa06g01940 Csa-Chr6:17548277 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78378 PF00069 Pkinase 3.50E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01939 - - csv:101209380 1479.54