Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01940 ATGGAGCGTTTGAGGAAGACTCTTGTGGGTCTCACGGTGATCATCTTATTATCAACACTGGCCTCAGCAGCCTCACAAGCCAAACCTGATTGTGATGAATGGTGTGGCGACTTACGAATTCCATATCCATTTGGAGTAAAACAAGGATGTTATTTCAACCAAGCATTCTTAATTACATGTGACAAAGCCTTTAACCCTCCAAAGGCGTTTCTAAAGGACACAAACATTAGCGTTACCAATATATCACTCAATGGTGAGCTCCATATCTTGCAGCCCATAGTCCGATTTTGCAACGAGGATGTGTCATTAGTGAATCGTTCTTTTATCCCCAACACAACCAACCTTCCTGCAACGGCGACATTCCCGATTGCGGATGGCAAAAACAAGTTCATCGCCATCGGTTGCAATACGTTCGGTTTTTTCACAGGGAAGCTGAAGGGAGGTGATCAATTTCTAACTGGTTGTATTGCGGTATGTCCAAATAATAATAAGAATAATACTTGGTCGTGTTCTGGGAATGGATGTTGTAAGTTGGATATTCCAGATGGGTCGAGTGATTTGAATTTGACTGTGGCTCCAGCGTTACTTGATACTGATCGTAATTTAGTGCAGAATAAACCGTGTGGGTATGCTTTTGTGGTTGGAGAAGAAGGGTTTGAGTTTAAACAAAGTTATATTGATAATTTTGAAGATACGGAAGTTGAGGTTGTGGTTGATTGGAGTACTGAAAGTGAAATAATTGATGTTTGTAGAAAAGATACTAAAAGGAATAGTAATTTCTCTGATGATAGATCTCAATATCGTTGCCAATGTCCGGATGGTTACGAAGGAAATCCATATCTCCCTCAAGGATGTGATCAAGATATAAATGAATGCGAGCATAAAGAGCTGAATGACTGCACGCACGAATGCATTAACACAAATGGAAGCTATACTTGCAAATGTCCTAAAAACTATAAAGGAGATGGAAGACGAGGGGAAGATGGACACGGCTGCACTCGAGATTCCAAGGCTATTCCCATCATAATCGGAATTGGAGTAGGGTTCACTGTTTTAGTAATTGCTAGCACATGGATATTCTTGGGTTACAAAAAGTGGAAGTTCATCAAAAGGAAAGAGAAATTTTTTAAAGAAAATGGAGGTTTCATACTTCAACAACAACTTTCTCAATGGCAATCCTCCCCAAATGAAATGGTCAGAATTTTCACCAAAGAAGAATTGGAGAAGGCCACAAACAACTACGACCATAGCACTATTGTTGGCAAAGGTGGGTACGGTACTGTTTACAAAGGAGTCTTAGAAGATGGCTTGGCAGTGGCAATCAAGAAATCGAAACTTATAGACCAATCCCAAACTGATCAATTCATTAATGAAGTTATTGTTTTGTCTCAAATCAACCATCGCAACGTGGTCAGACTCTTGGGATGTTGTTTAGAGACACAAGTCCCGTTGTTGGTGTATGAGTTTGTAACCAATGGCACCCTCTTTGAACACATCCATGACAAAACCAAGCATGCTTCACTTTCGTGGGAAGCCCGCTTAAAAATAGCATTGGAGACTGCAGGTGTGCTTTCGTATTTACATTCGTCAGCTTCCACTCCAATTATTCATAGAGATGTCAAGACGACCAACATACTTTTAGATAATAATTACACTGCAAAGGTATCCGATTTTGGAGCGTCAAAGTTGGTTCCAATGGATCAAACACAAGTATCCACGTTGGTACAAGGGACATTAGGGTATTTAGACCCAGAGTACTTATTGACAAGCGAGTTGACAGAGAAGAGCGACGTTTATAGTTTTGGAATAGTGTTGTTAGAGCTTATAACTGGGAAGAAAGCGGTGAGTTTTGATGGGCCAGAAGAGGAGAGGAACCTAGCAATGTATGTGCTTTGTGCAATGAAAGAAGATCGGTTGGAAGAAGTTGTGGAGAAAGCGATGATGGTGAAAGAGGCAAGTTTTGAGGAAGCTGTTAAACAAGTGGCTAAGGTAGCAATGAAATGCTTGAGAATTAAAGGGGAAGAGCGGCCCAGCATGAAAGAAGTGGCTATGGAGTTGGAGGGAGTGCGATCAATGCAAGTTCAACATTCATGGGCTAATAATAATGATTCGTCCAACTATGAGGAAACGATATGTTTATTGGATGTGGAAGCTTCAGACTCGAACAATTTTGCTTCGCGTGGCACTACGAGTATCGTTGGGGATAGCATAAAAGCTTCAATTTTGCCGCACATTCACCATGGAAGATGA 2250 40.98 MERLRKTLVGLTVIILLSTLASAASQAKPDCDEWCGDLRIPYPFGVKQGCYFNQAFLITCDKAFNPPKAFLKDTNISVTNISLNGELHILQPIVRFCNEDVSLVNRSFIPNTTNLPATATFPIADGKNKFIAIGCNTFGFFTGKLKGGDQFLTGCIAVCPNNNKNNTWSCSGNGCCKLDIPDGSSDLNLTVAPALLDTDRNLVQNKPCGYAFVVGEEGFEFKQSYIDNFEDTEVEVVVDWSTESEIIDVCRKDTKRNSNFSDDRSQYRCQCPDGYEGNPYLPQGCDQDINECEHKELNDCTHECINTNGSYTCKCPKNYKGDGRRGEDGHGCTRDSKAIPIIIGIGVGFTVLVIASTWIFLGYKKWKFIKRKEKFFKENGGFILQQQLSQWQSSPNEMVRIFTKEELEKATNNYDHSTIVGKGGYGTVYKGVLEDGLAVAIKKSKLIDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFVTNGTLFEHIHDKTKHASLSWEARLKIALETAGVLSYLHSSASTPIIHRDVKTTNILLDNNYTAKVSDFGASKLVPMDQTQVSTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFDGPEEERNLAMYVLCAMKEDRLEEVVEKAMMVKEASFEEAVKQVAKVAMKCLRIKGEERPSMKEVAMELEGVRSMQVQHSWANNNDSSNYEETICLLDVEASDSNNFASRGTTSIVGDSIKASILPHIHHGR* 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17548277 17552729 + CsaV3_6G031280.1 Csa06g01940 533567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01940 749 CDD STKc_IRAK 420 688 - -
Csa06g01940 749 SUPERFAMILY EGF/Laminin 287 323 - -
Csa06g01940 749 SUPERFAMILY Protein kinase-like (PK-like) 393 686 IPR011009 -
Csa06g01940 749 ProSiteProfiles Protein kinase domain profile. 414 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01940 749 Gene3D Laminin 246 327 - -
Csa06g01940 749 Gene3D Phosphorylase Kinase; domain 1 385 489 - -
Csa06g01940 749 ProSitePatterns Protein kinases ATP-binding region signature. 420 443 IPR017441 GO:0005524
Csa06g01940 749 Pfam Wall-associated receptor kinase galacturonan-binding 31 85 IPR025287 GO:0030247
Csa06g01940 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 20 713 - -
Csa06g01940 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 713 IPR045274 GO:0007166
Csa06g01940 749 Pfam Protein kinase domain 415 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01940 749 Gene3D Transferase(Phosphotransferase) domain 1 490 713 - -
Csa06g01940 749 ProSiteProfiles EGF-like domain profile. 288 327 IPR000742 -
Csa06g01940 749 ProSitePatterns Calcium-binding EGF-like domain signature. 288 313 IPR018097 GO:0005509
Csa06g01940 749 SMART egf_5 249 286 IPR000742 -
Csa06g01940 749 SMART egf_5 291 333 IPR000742 -
Csa06g01940 749 SMART serkin_6 414 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01940 749 SMART egfca_6 288 333 IPR001881 GO:0005509
Csa06g01940 749 Pfam Calcium-binding EGF domain 288 332 IPR001881 GO:0005509
Csa06g01940 749 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 304 315 IPR000152 -
Csa06g01940 749 CDD EGF_CA 288 322 - -
Csa06g01940 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01940 Csa-Chr6:17548277 Csa07g01122 Csa-Chr7:10925810 0 dispersed
Csa06g01940 Csa-Chr6:17548277 Csa06g01942 Csa-Chr6:17564988 0 proximal
Csa06g01939 Csa-Chr6:17512737 Csa06g01940 Csa-Chr6:17548277 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78379 PF00069 Pkinase 1.50E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01940 - - csv:105436006 1476.07