Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01942 ATGGAGCGTTTGAGGAAGACTCTTGTGGGTCTCACGGTGATCATCTTATTATCAACACTGGCCTCAGCAGCCTCACAAGCCAAACCTGATTGTGATGAATGGTGTGGCGACTTACGAATTCCATATCCATTTGGAGTAAAACAAGGATGTTATTTCAACCAAGCATTCTTAATTACATGTGACAAAGCCTTTAACCCTCCAAAGGCGTTTCTAAAGGACACAAACATTAGCGTTACCAATATATCACTCAATGGTGAGCTCCACATGTTGCAGCCTATAGTCCGATATTGCTACGAGGATGTGCAATTAGTGAGTGGTACTCCTTTTATCCCCAACACAACCAACCTTTCTGCACCGGCGACATTACCGATTGCGGATGGCAAAAACAAGTTCATCGCCATCGGTTGCAATACGTTCGGTTTATTCACAGGGATGCTAAAGGGAGGTGAATTTCTAACTGGTTGTGTTGCGATATGTACAAATAATAGTATTATAGTTGATGGGTCGTGTTCTGGGACTGGATGTTGTGAGTTGGATATTCCAAATGGGTTGAGTGATTTGAGTTTGGCTGTGGGTCCAGTGTTACCTGATACTAATCGTAGTTTAGTGAAGAATAATTCATGTGGGTATGCTTTTGTGGTTGGAGAAGAAGGGTTTAAGTTTAAATCAAGTTTTATTGATAATTTTGAAGATAAGGAAGTTGAGGTTGTGGTTGATTGGAGTATTGGAAATGAAACAATAATTGATGTTTGTGGAATAAATAGTAAAAGGAATAGTAGTTTCTCTGATGATAGATCTCAATACCGTTGCCAATGTCCGGATGGTTACGAAGGAAATCCATATCTCCCTCAAGGATGTGATCAAGATATAAATGAATGCGAGCATAAAGAGCTGAATGACTGCACGCACGAATGCATTAACACAAATGGAAGCTATACTTGCAAATGTCCTAAAAACTATAAAGGAGATGGAAGACGAGGGGAAGATGGACACGGCTGCACTCGAGATTCCAAGGCTATTCCCATCATAATCGGAATTGGAGTAGGGTTCACTGTTTTATTAATTGCTAGCACATGGATATTCTTGGGTTACAAAAAGTGGAAGTTCATCAAAAGGAAAGAGAAATTTTTTAAAGAAAATGGAGGTTTCATACTTCAACAACAACTTTCTCAATGGCAATCCTCCCCAAATGAAATGGTCAGAATTTTCACCCAAGAAGAATTGGAGAAGGCCACAAACAACTACGACCATAGCACTATTGTTGGCAAAGGTGGGTACGGTACTGTTTACAAAGGAGTCTTAGAAGATGGCTTGGCAGTGGCAATCAAGAAATCGAAACTTATAGACCAATCCCAAACTGATCAATTCATTAATGAAGTTATTGTTTTGTCTCAAATCAACCATCGCAACGTGGTCAGACTCTTGGGATGTTGTTTAGAGACACAAGTCCCGTTGTTGGTGTATGAGTTTGTAACCAATGGCACCCTCTTTGAACACATCCATGACAAAACCAAGCATGCTTCACTTTCGTGGGAAGCCCGCTTAAAAATAGCATTGGAGACTGCAGGTGTGCTTTCGTATTTACATTCGTCAGCTTCCACTCCAATTATTCATAGAGATGTCAAGACGACCAACATACTTTTAGATAATAATTACACTGCAAAGGTATCCGATTTTGGAGCGTCAAAGTTGGTTCCAATGGATCAAACACAAGTATCCACGTTGGTACAAGGGACATTAGGGTATTTAGACCCAGAGTACTTATTGACAAGCGAGTTGACAGAGAAGAGCGACGTTTATAGTTTTGGAATAGTGTTGTTAGAGCTTATAACTGGGAAGAAAGCGGTGAGTTTTGATGGGCCAGAAGAGGAGAGGAACCTAGCAATGTATGTGCTTTGTGCAATGAAAGAAGATCGGTTGGAAGAAGTTGTGGAGAAAGCGATGATGGTGAAAGAGGCAAGTTTTGAGGAAGCTGTTAAACAAGTGGCTAAGGTAGCAATGAAATGCTTGAGAATTAAAGGGGAAGAGCGGCCCAGCATGAAAGAAGTGGCTATGGAGTTGGAGGGAGTGCGATCAATGCAAGTTCAACATTCATGGGCTAATAATAATGATTCGTCCAACTATGAGGAAACGATATGTTTATTGGATGTGGAAGCTTCAGACTCGAACAATTTTGCTTCGCGTGGCACTACGAGTATCGTTGGGGATAGCATAAAAGCTTCAATTTTGCCGCACATTCACCATGGAAGATGA 2253 40.92 MERLRKTLVGLTVIILLSTLASAASQAKPDCDEWCGDLRIPYPFGVKQGCYFNQAFLITCDKAFNPPKAFLKDTNISVTNISLNGELHMLQPIVRYCYEDVQLVSGTPFIPNTTNLSAPATLPIADGKNKFIAIGCNTFGLFTGMLKGGEFLTGCVAICTNNSIIVDGSCSGTGCCELDIPNGLSDLSLAVGPVLPDTNRSLVKNNSCGYAFVVGEEGFKFKSSFIDNFEDKEVEVVVDWSIGNETIIDVCGINSKRNSSFSDDRSQYRCQCPDGYEGNPYLPQGCDQDINECEHKELNDCTHECINTNGSYTCKCPKNYKGDGRRGEDGHGCTRDSKAIPIIIGIGVGFTVLLIASTWIFLGYKKWKFIKRKEKFFKENGGFILQQQLSQWQSSPNEMVRIFTQEELEKATNNYDHSTIVGKGGYGTVYKGVLEDGLAVAIKKSKLIDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFVTNGTLFEHIHDKTKHASLSWEARLKIALETAGVLSYLHSSASTPIIHRDVKTTNILLDNNYTAKVSDFGASKLVPMDQTQVSTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFDGPEEERNLAMYVLCAMKEDRLEEVVEKAMMVKEASFEEAVKQVAKVAMKCLRIKGEERPSMKEVAMELEGVRSMQVQHSWANNNDSSNYEETICLLDVEASDSNNFASRGTTSIVGDSIKASILPHIHHGR* 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17564988 17569642 + CsaV3_6G031300.1 Csa06g01942 533569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01942 750 ProSiteProfiles Protein kinase domain profile. 415 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01942 750 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Csa06g01942 750 CDD EGF_CA 289 323 - -
Csa06g01942 750 CDD STKc_IRAK 421 689 - -
Csa06g01942 750 ProSitePatterns Calcium-binding EGF-like domain signature. 289 314 IPR018097 GO:0005509
Csa06g01942 750 Gene3D Phosphorylase Kinase; domain 1 386 490 - -
Csa06g01942 750 Gene3D Laminin 247 328 - -
Csa06g01942 750 SMART serkin_6 415 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01942 750 SMART egf_5 292 334 IPR000742 -
Csa06g01942 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Csa06g01942 750 Pfam Calcium-binding EGF domain 289 333 IPR001881 GO:0005509
Csa06g01942 750 SMART egfca_6 289 334 IPR001881 GO:0005509
Csa06g01942 750 ProSiteProfiles EGF-like domain profile. 289 328 IPR000742 -
Csa06g01942 750 SUPERFAMILY EGF/Laminin 288 324 - -
Csa06g01942 750 SUPERFAMILY Protein kinase-like (PK-like) 394 687 IPR011009 -
Csa06g01942 750 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Csa06g01942 750 Pfam Wall-associated receptor kinase galacturonan-binding 31 85 IPR025287 GO:0030247
Csa06g01942 750 Gene3D Transferase(Phosphotransferase) domain 1 491 714 - -
Csa06g01942 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 714 IPR045274 GO:0007166
Csa06g01942 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 20 714 - -
Csa06g01942 750 Pfam Protein kinase domain 416 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01937 Csa-Chr6:17460747 Csa06g01942 Csa-Chr6:17564988 0 dispersed
Csa06g01939 Csa-Chr6:17512737 Csa06g01942 Csa-Chr6:17564988 0 dispersed
Csa06g01942 Csa-Chr6:17564988 Csa07g01122 Csa-Chr7:10925810 0 dispersed
Csa06g01940 Csa-Chr6:17548277 Csa06g01942 Csa-Chr6:17564988 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78380 PF00069 Pkinase 1.50E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01942 - - csv:116404729 1478.0