Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01952 ATGGGTGGCGGTGCCGGTGCCGGTGGTCCGAGTAGGGAGTTAGATCAAACTCCGACATGGGCCGTTGCCGCTGTTTGTGCAGTCATCATTCTTATTTCCATCATATTGGAAAAGGTTCTTCACATGGTTGGAGAGATATTTCAAAAAAGGAAAAAGAAAGCCTTGTATGAAGCGCTCGAGAAAGTTAAAGGAGAGCTTATGGTTTTAGGATTCATTTCTTTGCTCTTAACATTTGGGCAAAATTATATTGCTAAAGTTTGTATACCCTCAAAGTATGAAAATACTATGTTGCCTTGCCCTTTTAGAGGGAGTAGTACTACTTTACCTAAAAGCTCCCATCACGCCGAGCCTGATGATGATGAAGAGACTTCCGATCACCATCGTAGGCTTCTTTGGTACGAGCATCGACGTCTAGGTGGTGGTGGTTCTGTAGAAGGTTGCAAACCAGGGTATACACAACTTATATCTCTAAATGGTTTGCATCAAATACATATCTTCATCTTCTTTCTAGCCGTTCTCCATGTTGTATTTAGTGCCATAACGATGACTCTCGGAAGATTGAAAATTCGTGCGTGGAAGGTATGGGAAAGACAGACCGAACAAGAACATGATGCCATGAACGATCCTACAAGGTTTAGACTTACTCACGAGACATCCTTTGTGAGAGATCACAGCAGTTTTTGGACCAAAACCCCCCTCTCCTTTTACTTTGTATGCTTCTGGAGGCAATTCTTTAGGTCCGTTAGTAGGCCAGATTACTTGTCCCTTAGACATGGTTTTGTCACTGTCCATTTAGCCCCTGGGAGTAAATTTGACTTTCAGAAGTACATTAAAAGGTCATTAGAAGATGACTTTAAGGTGGTCGTGGGAATCAGTCCTCTGCTATGGGCATCAATGGTGCTTTTTCTGCTTCTCAATGTTAATGGGTGGCAAGTTATGTTTTGGGTGTCTATATTTCCTCTAGTGGTGATCTTAGCTGTTGGAACAAAGTTGCAAGGAATTATAACACAAATGGCTCTTGAAATCAAAGAAAGACATGCAGTGGTTCAAGGGATTCCCCTTGTTCAAGTCTCTGATAGACATTTTTGGTTTAGTTGGCCCATTTTGGTTCTTTATCTCATCCATTATGTCCTTTTCCAGAATGCATTTGAGATTACATATTTCTTTTGGATATGGTATGAATTTGGGTTGAGATCATGCTTTCATGACAACTTTGATCTTATTATCGCGAGAGTTGGTCTAGGGGTTGGAGTCCAGATTTTGTGCAGTTACATTACACTCCCATTATATGCTCTTGTAACTCAGATGGGATCAACAATGAAGAAATCCATATTTGATGAACAAACTTCGAAAGCATTGAAGCAATGGCATAGAAGTGCTTTGAAGAAAAAGAACGAAGGAGGAAAGCCTGAACCAACGCCGATGCGAACTTTAGGCGGTGCCGTTGTTGTTGGAGGAAGCCCTCCCGAGTCACCGATACAACAACCTTTGCATGATCAATTCCAACATCAAACAATGACTCAATCATCACCAACCGACGTCGAAGCCTCCGCCGTTCCTTCAGTCAACATAATGACTACCGTTGATCTCCACCAACAACAGCAAAACTATTCCAATCGTGACTTGTTGAGATGA 1635 41.96 MGGGAGAGGPSRELDQTPTWAVAAVCAVIILISIILEKVLHMVGEIFQKRKKKALYEALEKVKGELMVLGFISLLLTFGQNYIAKVCIPSKYENTMLPCPFRGSSTTLPKSSHHAEPDDDEETSDHHRRLLWYEHRRLGGGGSVEGCKPGYTQLISLNGLHQIHIFIFFLAVLHVVFSAITMTLGRLKIRAWKVWERQTEQEHDAMNDPTRFRLTHETSFVRDHSSFWTKTPLSFYFVCFWRQFFRSVSRPDYLSLRHGFVTVHLAPGSKFDFQKYIKRSLEDDFKVVVGISPLLWASMVLFLLLNVNGWQVMFWVSIFPLVVILAVGTKLQGIITQMALEIKERHAVVQGIPLVQVSDRHFWFSWPILVLYLIHYVLFQNAFEITYFFWIWYEFGLRSCFHDNFDLIIARVGLGVGVQILCSYITLPLYALVTQMGSTMKKSIFDEQTSKALKQWHRSALKKKNEGGKPEPTPMRTLGGAVVVGGSPPESPIQQPLHDQFQHQTMTQSSPTDVEASAVPSVNIMTTVDLHQQQQNYSNRDLLR* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17630672 17636076 - CsaV3_6G031400.1 Csa06g01952 533579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01952 544 PANTHER MLO-LIKE PROTEIN 5-RELATED 6 484 - -
Csa06g01952 544 Pfam Mlo family 12 469 IPR004326 GO:0006952|GO:0016021
Csa06g01952 544 PANTHER MLO-LIKE PROTEIN 1 6 484 IPR004326 GO:0006952|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00015 Csa-Chr3:258268 Csa06g01952 Csa-Chr6:17630672 0 dispersed
Csa06g00633 Csa-Chr6:5305552 Csa06g01952 Csa-Chr6:17630672 3.02E-138 dispersed
Csa06g01952 Csa-Chr6:17630672 Csa06g03661 Csa-Chr6:29433070 1.32E-123 dispersed
Csa06g01952 Csa-Chr6:17630672 Csa06g03404 Csa-Chr6:28194532 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01952 K08472 - csv:101208890 1092.41