Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01954 ATGGCAGAGAGTTGGGATGGAAGTTATGAGGATTCTGGAAGTATATCTGACGAGAGTAGTTATTATGCGAGACTGCATATTGAACCTATTTATGATTCGTTTTTGTGCCCTCTAACGAAGCAAGTAATGAGGGATCCTGTTACTATAGAAAGTGGGCAAACGTTTGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGTAAGGAAAGTAGAAGGAGGCCAATTTGTCCAATGACACTTAAGGAATTAAGAAGCACGGAATTGAATCCCAGTATTGCTTTGCGGAATACTATTGAAGAGTGGACTGCTAGAAATGAAGCTGTTCAGCTAGATATGGCTCGTAAGTCACTTAACTTGAGTAGTCCAGAAAATGAAACTTTGGGATCTTTGAAGTATGTTCAACATGTCTGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACAAGTCGAAAAGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATTGTGGCACAAGAAGACAGTGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCCTGCGTCATGAGCGTTCAAAGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCTGAAGCCTTGTGTGAAGAGATCGGTTCAGTTAATGGGGCAATTCTTATATTAGTTGGAATGTCAAGCAGTAAATCTGAGAACATCTCCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGGTGTGTGAGAATAACATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCCCGCCAGAAACTAAACAATCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCGTCTCTAATTAATATTATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCGTTTGATACTAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACAGTTAGTTCGAATCAACTTCCAATGAAACTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCAATTCCAGTAGAACCTAATAATCAGTCTACACTTGTGTCTGAAGATACTATCCATAACCTGCTACAACTCATTAGCAATACCGGACCAGCTATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAACTATTTCAAGTATTGTTAATGCCATTAGAAGCTCTGGTGCAGTTATCAGCTTGGTTCAATTTATTGAAGCCCCACAGCTCGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAATATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCAGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCGGAAAATACTGGAATCACCGAAGAACAGGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCAGAAATGGATTTTGGCCTCTCTAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGAGGTGGCCGATTTTTAACACCATTCCTTGAAGGCCTCGTTCGAATTCTTGCAAGGATTACAAGCCTTGTACCGGCTGCTGAGTGTGAGCCTGATGCTAGAGCATTTTGTCGCAGGCACAATCTTGCTGCTTTATTCATTGAACTGCTTCAGTCTAATGGACTCGACAATGTGCAGATGGTTTCAGCCCTGGCATTGGAAAACTTATCTCTAGAATCCAAAAATTTGACTCAGATACCTACGCTTCCCGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCGGTTCTAACAGGGCTGTGTCCTCTCCATCGAGGAACATGTTCTCTGAGGGAAAGTTTTTGTCTTTTGGAAGATAAGGCAGTGAACAAATTAGTAGCCCTTTTAGATCACACAAACGAGAAGGTCGTCGAGGCAGCTCTTGCAGCACTATCTACGTTGTTGGACGATGGGGTCGATGTTGAAAAGGGGGTTAACATTTTGTACGATGCAGAAGGTGTTCAGCCTATATTTAATGTGTTGCTTGAAAACCGTACAGAGAACCTGATGAGAAGAGCCGTTTGGACGGTCGAGAGGCTGTTGCGCTCAGACGACATAGCAATTGAATTCTCAAATAATCCAAAGGTGAGTACAGCTCTTGTTGATGCCTTCCAGCATGGTGATTACAAAACAAGACAAACTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAGTAATATGGGATAA 2463 42.75 MAESWDGSYEDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECKESRRRPICPMTLKELRSTELNPSIALRNTIEEWTARNEAVQLDMARKSLNLSSPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDSECKEMLAEGDTLHTVVKFLRHERSKEKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENISTVENADRTLENLEVCENNIRQMAEYGRLRPLLTQILEGPPETKQSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFDTSARVLVQEGILPPLVKDLFTVSSNQLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQSTLVSEDTIHNLLQLISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAVISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDFGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITSLVPAAECEPDARAFCRRHNLAALFIELLQSNGLDNVQMVSALALENLSLESKNLTQIPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEDKAVNKLVALLDHTNEKVVEAALAALSTLLDDGVDVEKGVNILYDAEGVQPIFNVLLENRTENLMRRAVWTVERLLRSDDIAIEFSNNPKVSTALVDAFQHGDYKTRQTAERALRHVDKLPNFSNIFPNPSNMG* 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17644201 17656717 - CsaV3_6G031420.1 Csa06g01954 533581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01954 820 SMART arm_5 139 179 IPR000225 GO:0005515
Csa06g01954 820 SMART arm_5 266 306 IPR000225 GO:0005515
Csa06g01954 820 SMART arm_5 676 717 IPR000225 GO:0005515
Csa06g01954 820 SMART arm_5 307 346 IPR000225 GO:0005515
Csa06g01954 820 SMART arm_5 448 488 IPR000225 GO:0005515
Csa06g01954 820 SMART arm_5 721 763 IPR000225 GO:0005515
Csa06g01954 820 SMART arm_5 347 392 IPR000225 GO:0005515
Csa06g01954 820 SMART arm_5 181 221 IPR000225 GO:0005515
Csa06g01954 820 SMART arm_5 594 635 IPR000225 GO:0005515
Csa06g01954 820 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Csa06g01954 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 106 IPR013083 -
Csa06g01954 820 Pfam Armadillo/beta-catenin-like repeat 685 715 IPR000225 GO:0005515
Csa06g01954 820 Gene3D - 574 811 IPR011989 -
Csa06g01954 820 SUPERFAMILY ARM repeat 449 805 IPR016024 -
Csa06g01954 820 CDD RING-Ubox_PUB 34 79 IPR045210 -
Csa06g01954 820 SUPERFAMILY RING/U-box 18 111 - -
Csa06g01954 820 Gene3D - 107 536 IPR011989 -
Csa06g01954 820 SUPERFAMILY ARM repeat 112 445 IPR016024 -
Csa06g01954 820 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 815 - -
Csa06g01954 820 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 815 - -
Csa06g01954 820 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Csa06g01954 820 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02538 Csa-Chr5:26833398 Csa06g01954 Csa-Chr6:17644201 4.45E-110 dispersed
Csa06g01954 Csa-Chr6:17644201 Csa05g01046 Csa-Chr5:10336742 8.86E-19 dispersed
Csa06g01954 Csa-Chr6:17644201 Csa01g02400 Csa-Chr1:21307088 1.64E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01954 - - csv:101217370 1559.27