Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01959 ATGCCTTGCTTTTCTTCTTGTATTTCTCGTACTCAAGATGGGAGCCGGGTCGAAACTGATAGTCGTATTCGATTTGAATCCCGCCATTCTGCTAATTCCTCAGGTACATGGAGGGGAAAAGAAGGTGAGAGCAAGCATGAAAGCTGTCCGAAGAGGAGCGCAGCTGCTCGTAGTTTTACGTTCCGTGAACTCGCCATGGCTACAAGAGGTTTCAAGGAAGTAAATTTGCTTGGAGAGGGTGGTTTTGGACGTGTATACAAAGGACGTTTGGAATCAGGACAGATTGTCGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAGGAATTTATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCTAATCTCGTCACCTTGATTGGTTACTGTACTGATGGGGATCAAAGGCTTTTGGTTTATGAGTTCATGCCTATGGGAAGCCTGGAAGACCATCTTTTTGATATAGGTACTGACAAAAAGCCTTTGAGTTGGAATACAAGGATGAAGATTGCAGTTGCCGCTGCCCGAGGCATTGAGTATCTCCACTGCAAAGCAAATCCACCAGTCATATACCGTGACTTGAAATCAGCTAATATCTTATTGGACAATGACTTTAATCCTAAGCTTTCAGATTTCGGCCTGGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAATAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGTGGAAAATTAACCGTTAAATCTGATATTTACAGCTTTGGTGTTGTTCTACTTGAGCTTATTACAGGGCGCAAGGTAATTGATACAAAAAGGAGACCAGGAGAGCAGAACCTAGTTGTTTGGTCCCGTCCTATACTTGGCGACCGAAGAAGGGTTTTGGAACTAGTTGATCCCCTGTTGGAAGGACAGTTCCCTCTTCGTTGTTTGCAACACGCAGTTGCAATTACTGCAATGTGTCTTCAGGAACAACCATTGTTTCGCCCTCTTATTACTGATATTGTTGTAGCACTCGAGTATTTGGCCTCTCAAAGTTATTTACGAGAAGTACGCTGTCGTAGGTTTAACAATTCATCACAAATATCGCCCCCACAACAGAATAAAGACACCCATGCCCAGGAATCAGATCCTTAA 1152 43.75 MPCFSSCISRTQDGSRVETDSRIRFESRHSANSSGTWRGKEGESKHESCPKRSAAARSFTFRELAMATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEFMPMGSLEDHLFDIGTDKKPLSWNTRMKIAVAAARGIEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRIMGTYGYCAPEYAMSGKLTVKSDIYSFGVVLLELITGRKVIDTKRRPGEQNLVVWSRPILGDRRRVLELVDPLLEGQFPLRCLQHAVAITAMCLQEQPLFRPLITDIVVALEYLASQSYLREVRCRRFNNSSQISPPQQNKDTHAQESDP* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17687348 17692195 + CsaV3_6G031470.1 Csa06g01959 533586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01959 383 Gene3D Phosphorylase Kinase; domain 1 42 146 - -
Csa06g01959 383 MobiDBLite consensus disorder prediction 27 51 - -
Csa06g01959 383 PANTHER OS07G0668900 PROTEIN 25 374 - -
Csa06g01959 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Csa06g01959 383 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01959 383 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Csa06g01959 383 Gene3D Transferase(Phosphotransferase) domain 1 147 365 - -
Csa06g01959 383 SUPERFAMILY Protein kinase-like (PK-like) 57 363 IPR011009 -
Csa06g01959 383 CDD STKc_IRAK 77 345 - -
Csa06g01959 383 MobiDBLite consensus disorder prediction 363 383 - -
Csa06g01959 383 Pfam Protein kinase domain 72 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01959 383 SMART serkin_6 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01959 383 PANTHER OS07G0668900 PROTEIN 25 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02704 Csa-Chr4:26173294 Csa06g01959 Csa-Chr6:17687348 0 dispersed
Csa06g01959 Csa-Chr6:17687348 Csa07g01499 Csa-Chr7:15365200 4.58E-152 dispersed
Csa06g01959 Csa-Chr6:17687348 Csa05g00641 Csa-Chr5:4259160 3.77E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78381 PF00069 Pkinase 6.40E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01959 - - csv:101217131 773.852