Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01991 ATGAATATCCCACATCCCGTCGCCGCCATTATTCCGGCGGCTCTATATTTTCTTGCCGGCCTCTTCTTCTTCAGTACTACCGCGGCCGCTCAGAATGCGAGCAGTAGCACCGTCCCGGTGAACGTTGGGGTTGTGTTGGATATGGAGAGCTGGATTGGGAAGATGGGGTTGAGTTGTATCGACATGTCTTTATCGGAATTTTATTCTCTTAATCCTCACTACCACACCAGAATCGTTCTTCACCCTAAAGATTCCGGTCGCGATGTCGTGGGGGCCGCCGCTGCAGCACTTGATTTGATAAAGAACAATAAAGTTCATGCAATCTTGGGACCAACCACTTCAATGCAAGCCAATTTTGTGATCGAGCTCGGCCAAAAAGCTCACGTCCCTATACTAACCTTCACTGCCTCCAGCCCCGCTCTCGCCTCCCTCCGCAGTCCTTACTTCTTTCGCCTCACCCAAAACGACTCTGCTCAGGTCGTCGCCATTAGTGACCTCGTCAAATCTTATAGTTGGAGACAGGTGGTTCCGATCTACGAAGATGATGAATTTGGAGACGGAATGTTACCGTATTTGATCGACGCGCTACAGAGCGTTAATGCACGCGTACCGTACCGGAGCGTCATTGATCCGGCAGCAACTGACGATCAAATCAAAGAAGAGCTTTACAAATTGATGACGATGCAGCCCAGAGTGTTCGTAGTACACATGCTTCCTTCTCTAGCAGCTCGATTATTCATGAAGGCCAATGAGATCGGAATGATGAGCGAAGGCTACGCTTGGATTCTAACCGACGGAACAACAAACGTTCTCGATTCCTTGGATTCCTCTGTTCTTAAGTCCATGGAAGGAGCTTTAGGAGTGAAAACATACGTCCCAAAATCACTAGAGCTCGACAGTTTCAAAATCAGATGGAAGCGCAAATTCCTAATCGAAAACCCCATCATCAACGAACCTCAATTAGACGTGTTCGGATTATGGGCTCACGATGCTGCTCGAGCACTAGCAATGGCGGTAGAGAAAACAGGGGAAAGAGAATTCAAATACAAAAACAACCCAATTAACGAATCGAACAACAAGCAAACAGATCTTCAAACATTAGGGGTGTCTGAAAACGGGGAGAAAATCCGAGATGTTTTATTGAAGACGAGGTTCAAAGGGCTGACAGGGAATTACAGGATCGTAAAGGGTGAGCTTCAATCGGATAATCTTGAGATAGTGAATGTGAATGAGGATGGGGGCAAACGGGTGGGGTTTTGGAATCCGGAGAAAGGGTTGACTAAGAATTTGAGTCAGAGTGGGACGAAACCAGTGATATGGCCGGGGGATACGACAGCGGTTCCAAAAGGATGGGAGTGGCCGGTGGCCGGGAAGAGGCTGAAAATAGGGTTTCCTGTGAAGGAAGGGTATAATGAGTTTGTGAGAGTGAAGGAAAACGGAACAGGGGCGGAAGGGTATTGTACGGATGTGTTTGATGCAGTAATTGCAAAGCTTCCGTACGCAGTTCCGTATGATTACGTTCCGTTTGCATTTCCTAATGGTTCCAGCGCGGGATCTTACGATGATCTCATCATTCAAGTCTATAAAGGGATATACGATGGGGCAGTAGGAGACATAACGATCGTAGCAAACAGATCAAACTACGTGGACTTCACGTTACCCTTCACAGAATCAGGAGTTTCAATGGTGGTTCCAACACAAGGCAACTCCAAGAACAGAGCATGGATTTTCTTAAAACCTCTTACATTAAACCTTTGGATCACAAGCTTCTGCTTCTTTGTCTTCATGGGTTTTGTTGTTTGGATTCTCGAACATCGAATCAACGAAGAATTTCGTGGTCCACCATCTCACCAAATCGGCACAAGCCTCTGGTTTTCCTTCTGCACCATGGTCTTTGCTCAAAGGGAAAGTTTGGTGAGCAATTTGGCGAGATTCGTGGTGGTCATATGGTTCTTTGTTGTGTTTATTCTGACTCAGAGTTACACTGCAAGTTTGACTTCTCTTTTAACAGTTCAACAATTGCAACCTACCATTACTGATGTTAATGAGTTGTTGAAGAATCAGCCATGGGTTGGATATCAAGATGGTTCCTTTGTTTTTGAGTTATTGAAATCTGTGGGGATTAAGAATCTTAGGCCTTATGATACTCCTCAGCAACTGGATGAGATGTTCAAATCTGGAAGCTCTAATGGCGGAATTGATGCTGCTTTTGATGAAATCCCTTATATTAAACTCTTTCTTCACAAGTTTCCTGATAAGTACATCATGGCTGAGCCCAACTACAAAACTGATGGATTTGGATTTGCATTTCCGATTGGCTCCCCATTGGTGGGAGACGTGTCGAGAGCCGTGTTAAACGTGACAGAAAGTGAGAAGATGAACCAAATACAAAATACATGGTTTGGTGATCAATGTAACTCGTTGTCTTCTGGCTCAAAGGTCACTTCTTCAAGGCTCAGCCTTGGTAGCTTTTGGGGGCTCTTTCTCATTGCCGGCAGTGCTGCCATCATTGCTCTTCTTGTCTACGGTTTCATTTTTTTCCACAAGGAACAGCACACGCTCCATCGCACTGCCGATCAAGGCTCGAACAATACCGTCCGAGATAAAATCCGAGCGTTTCTCAAGACTTACGATGAAAGAGACTTGACTTCACATACATTTAAGAAGAGTAATCTTGGTCATGGGGACAAAACGAACCGTGTGATCGATGGTGGTTCCATTTCGGCCTCACCGGGGTCTAATTACCCACCGAATCCGTCAAATTATTCAGTCCAGGACACTAGTTTTGATTTCTACTCTGAATCAGGGAATGCAAGTCCCATGAATCATCAAGCTTTGGAAATGGTGGTGAGTACAACCATGGACGCATCTTTGGGAAATGGAGAAGAAATAACTGAAATCCATGTGAATTAA 2913 45.38 MNIPHPVAAIIPAALYFLAGLFFFSTTAAAQNASSSTVPVNVGVVLDMESWIGKMGLSCIDMSLSEFYSLNPHYHTRIVLHPKDSGRDVVGAAAAALDLIKNNKVHAILGPTTSMQANFVIELGQKAHVPILTFTASSPALASLRSPYFFRLTQNDSAQVVAISDLVKSYSWRQVVPIYEDDEFGDGMLPYLIDALQSVNARVPYRSVIDPAATDDQIKEELYKLMTMQPRVFVVHMLPSLAARLFMKANEIGMMSEGYAWILTDGTTNVLDSLDSSVLKSMEGALGVKTYVPKSLELDSFKIRWKRKFLIENPIINEPQLDVFGLWAHDAARALAMAVEKTGEREFKYKNNPINESNNKQTDLQTLGVSENGEKIRDVLLKTRFKGLTGNYRIVKGELQSDNLEIVNVNEDGGKRVGFWNPEKGLTKNLSQSGTKPVIWPGDTTAVPKGWEWPVAGKRLKIGFPVKEGYNEFVRVKENGTGAEGYCTDVFDAVIAKLPYAVPYDYVPFAFPNGSSAGSYDDLIIQVYKGIYDGAVGDITIVANRSNYVDFTLPFTESGVSMVVPTQGNSKNRAWIFLKPLTLNLWITSFCFFVFMGFVVWILEHRINEEFRGPPSHQIGTSLWFSFCTMVFAQRESLVSNLARFVVVIWFFVVFILTQSYTASLTSLLTVQQLQPTITDVNELLKNQPWVGYQDGSFVFELLKSVGIKNLRPYDTPQQLDEMFKSGSSNGGIDAAFDEIPYIKLFLHKFPDKYIMAEPNYKTDGFGFAFPIGSPLVGDVSRAVLNVTESEKMNQIQNTWFGDQCNSLSSGSKVTSSRLSLGSFWGLFLIAGSAAIIALLVYGFIFFHKEQHTLHRTADQGSNNTVRDKIRAFLKTYDERDLTSHTFKKSNLGHGDKTNRVIDGGSISASPGSNYPPNPSNYSVQDTSFDFYSESGNASPMNHQALEMVVSTTMDASLGNGEEITEIHVN* 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17912287 17917747 + CsaV3_6G031790.1 Csa06g01991 533618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01991 970 Pfam Receptor family ligand binding region 75 411 IPR001828 -
Csa06g01991 970 Gene3D - 460 573 - -
Csa06g01991 970 CDD PBP1_GABAb_receptor_plant 41 430 IPR044440 -
Csa06g01991 970 Gene3D - 157 321 - -
Csa06g01991 970 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 897 - -
Csa06g01991 970 PANTHER GLUTAMATE RECEPTOR 2.9 39 897 - -
Csa06g01991 970 SUPERFAMILY Periplasmic binding protein-like II 438 804 - -
Csa06g01991 970 PIRSF IGluLR_plant 11 935 IPR017103 -
Csa06g01991 970 Pfam Bacterial extracellular solute-binding proteins, family 3 476 802 IPR001638 -
Csa06g01991 970 Gene3D - 368 459 - -
Csa06g01991 970 CDD GluR_Plant 458 801 - -
Csa06g01991 970 MobiDBLite consensus disorder prediction 888 920 - -
Csa06g01991 970 SUPERFAMILY Periplasmic binding protein-like I 39 451 IPR028082 -
Csa06g01991 970 Pfam Ligand-gated ion channel 803 833 IPR001320 GO:0015276|GO:0016020
Csa06g01991 970 MobiDBLite consensus disorder prediction 903 920 - -
Csa06g01991 970 Gene3D - 752 807 - -
Csa06g01991 970 SMART GluR_14 459 803 IPR001320 GO:0015276|GO:0016020
Csa06g01991 970 Gene3D - 574 698 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02099 Csa-Chr2:19099467 Csa06g01991 Csa-Chr6:17912287 0 dispersed
Csa02g02450 Csa-Chr2:21600847 Csa06g01991 Csa-Chr6:17912287 0 dispersed
Csa02g02451 Csa-Chr2:21607636 Csa06g01991 Csa-Chr6:17912287 0 dispersed
Csa02g02452 Csa-Chr2:21618178 Csa06g01991 Csa-Chr6:17912287 7.62E-137 dispersed
Csa03g04094 Csa-Chr3:35891280 Csa06g01991 Csa-Chr6:17912287 0 dispersed
Csa04g02305 Csa-Chr4:23594567 Csa06g01991 Csa-Chr6:17912287 1.38E-136 dispersed
Csa06g01746 Csa-Chr6:15363664 Csa06g01991 Csa-Chr6:17912287 4.55E-42 dispersed
Csa07g00367 Csa-Chr7:2736621 Csa06g01991 Csa-Chr6:17912287 5.03E-149 dispersed
Csa06g01991 Csa-Chr6:17912287 Csa06g03402 Csa-Chr6:28181168 8.30E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01991 K05387 - csv:101205977 1862.43