Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02004 ATGAGCCTACGCAAGGGCTCTAAGGTTTGGGTGGAGGATAGAGATTTTGCTTGGGTGGCGGCTGAAGTCCTCGACTTCGTTGCTAAACAAGTTCGAGTTTCAACTGCTACTGGAAAGAAGGTGTTGGCTCTTCCTGAGAAGCTGTTGCCGAGGGATGCGGATGAGGATGATCATGGTGGAGTGGATGATATGACCAAGTTGACCTATTTGAATGAGCCTGGAGTGCTTTATAATCTTCAAAGAAGATATTCTCTTAATGACATATATACATACACTGGTAGCATTTTGATTGCTGTTAATCCATTCACAAAGCTTCCCCATCTATACAATGTTCACATGATGGAGCAGTACAAGGGAGCACCTTTTGGGGAACTGAGCCCTCATGTTTTTGCCGTTGCTGATGCATCATATAGAGCAATGATTAGTGAGGGGCGAAGCCAGTCTATATTGGTCAGTGGAGAGAGTGGGGCAGGGAAAACTGAGACAACAAAATTGATTATGCAATATCTTACATTTGTTGGAGGTCGAGCGTCAGGTGATAACAGAACTGTTGAACAACAAGTTCTTGAATCAAATCCTTTACTGGAAGCATTTGGTAATGCAAGGACTGTTAGAAATGATAATTCAAGTCGTTTTGGAAAGTTTGTTGAAATTCAATTTGACACCAACGGTAGAATATCGGGTGCTGCAATTAGAACTTACCTTCTAGAACGTTCTCGTGTTGTACAAATTACGAACCCTGAGAGGAACTATCATTGTTTTTATCAGTTATGTGCTTCAGGAAGGGATGCCGAGAAGTACAAGTTAGATCACCCAAGTCATTTTCGATACTTAAATCAAAGCAAGACCTATGAATTAGATGGAGTGAGCAATGCTGAAGAGTATATTAGGACAAGGAGAGCGATGGACATAGTTGGTATCAGTCATGAGGATCAGGAAGCTATCTTTCGTACCTTGGCTGCGATTTTGCATTTGGGGAACGTTGAGTTTTCTCCTGGAAAAGAATACGACTCTTCGGTCTTGAAGGATGAAAAATCTTCCTTTCATCTAGGGGTGGCTTCTAATCTTCTCATGTGTGATTCCAACCTCTTGGTCTTGGCCCTTTGTACTCGCTCAATTCAAACTCGTGAAGGAATTATTGTTAAAGCGCTAGACTGTGAAGGTGCTGTTGCTAGTCGGGATGCATTGGCAAAGACTGTTTATTCTCGTCTGTTTGATTGGCTTGTTGATAAGATTAACCAGTCTGTCGGGCAAGATTTGAATTCTCAATTTCAAATTGGTTTACTGGACATTTACGGTTTTGAGTGTTTTAAGGACAATAGTTTTGAGCAGTTTTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTCTTTAAGATGGAACAGGAAGAGTATAGCAAAGAGGAAATAAATTGGAGCTACATTGAATTTATCGACAATCAGGATGTGTTGGATTTGATTGAGAAGAAACCTATTGGGATCATTGGTTTGCTGGATGAGGCTTGTATGTTCCCAAGATCAACTCATGAAACATTCTCAACCAAATTGTTTCAGAATTTTCGTACTCATCCGAGGTTGGAAAGAACAAAATTTTCAGAAACAGATTTCACCCTTTCCCATTATGCTGGAAAGGTCACTTATCATACAGATACATTTTTAGATAAAAATCGTGATTATGTTGTGGTAGAACATTGCAATTTATTGGCTTCTTCTAGATGCAATTTTGTTGCTGGCCTTTTCTCTTCCTTACCAGAGGAATCCTCAAGATCATCGTATAAATTTTCTTCTGTGGCCTCAAGATTTAAGCAACAACTTCAAGCACTGATGGAGACACTGAATTCTACCGAGCCCCATTATGTGCGCTGTGTGAAGCCAAACTCTCTTAATAGGCCCCAGAAGTTCGAGAATCTAAGCATTCTGCATCAATTACGCTGTGGGGGTGTTTTGGAGGCTGTTCGAATAAGTCTAGCAGGTTATCCCACTAGAAGAACTTATGCCGAGTTTATTGATCGTTTTGGATTGTTGGCACCTGAATTAGTAGATGGAAGCTACGATGAAAGATTGATTACAGAAAAGATTCTAGAAAAGCTGAAGCTAAAAAATTTTCAGTTGGGTAGGACCAAAGTCTTTCTTAGGGCTGGTCAAATTGGAATACTGGATGCTCGAAGAGCTGAAGTATTAGACAATGCTGCAAAGTGCATTCAACGCCGATTACGGACATATCATGCGCGCAAGGATTTTCTATTGATGCGTTCTACTGCGATTGCACTTCAAGCATATTGCAGAGGATGCCTTGCCCGAAAGTTTTATGTAGCAAAACGAGAAAGCAATGCTGCCACCACAATACAGAAATATATTCGCAGGTGGTTCTTCAGGAATATTTATTTGGAGCTCTATTCAGCTGCTCTAACCATACAGTCCGGTATCCGTGGTTTTGCAACTCGCAATAGGTTTTTACACGATAGAAGAAATAAAGCTGCGGTATTAATTCAGGCTCGATGGAGGACATTCAAAGTTCGTGCTATTTTCCATCGCCACCAAGCTTCTATTATTGCAATACAATGTCGATGGAGGCAAAAACTTGCAAAAAGGGAACTTCGAAGACTTAAACAGGAGGCTAATGAAGCTGGAGCATTGCGTTTAGCTAAAAACAAACTTGAAAAGCAGTTGGAAGATCTTACATGGCGGTTGCATTTGGAGAAAAGATTGCGGGCTTCCAATGAAGAGGCCAAGTCAAACGAAATATTAAAATTGCAAAAGATGCTGCAATCCTCAAGTCTGGAGTTAGATGCAGCTAAATTAGCTGCAATCAATGAATGCAACAAAAATGCTGTGCTGCAAAACCAAGTGGAATTGTTGTCGAAGGAGAAGTATGCTTTTGAAAGAGAAATGGTAGCGGTAGTTGAATTAAGAAAAGAAAATGCTTTCCTCAAGAGTGCTTTGGACGCCATGGAGAAACGGAACTCAGCTCTGGAAGTTAAGCTTGTTGAGGCACAAAAGGAGGGTAGTCACACTGTTGAAAAGTTGCAGGATGTTGAACAGAAATGCTCTAAACTTCAACAGAACGTGAAAAGTCTTGAAGAGAAACTCTCCATTCTAGAGGACGAAAATCATGTATTGCGACAGAGAGCCTTAACTGCAACTCCAAGGAGCAACCGACCCAATTTTGCAAGGGCATTATCGGAGAAATCCTCTGGTGTGCTTGTCCCTAATGCTGATCGGAAAACTCTATTTGAGTCACCAACACCGACAAAACTGGTTGCACCTTTTTCACAAGGCCTTTCTGAATCACGGCGAACAAAATTAACTGTAGAGAGACACCAGGAAAACTATGAAGTCCTTTCTAGGTGTATAAAAGAAAATTTGGGATTTAAAGGTGGCAAACCACTCGCTGCTTGCATTATCTACAAATGCCTTCTTAACTGGCATGCCTTTGAATCAGAACGAACAGTTATTTTCGACTATATAATTGAAGGAATCAATGACGCCCTCAAGTCTGGGGATGAGAATACTACCTTGCCATATTGGCTGTCAAATGCGTCTGCATTACTATGCCTCTTGCAAAGAAATTTGAAGTCAAATGGTTTTTTGAGCGCAGCTTCTCAGCGTTCCACTGGTTCCACTGGCTTAGCTAGCAGGATTTCTCAGGGACTAAAATCACCCTTCAAATATATTGGGTTTGAAGATGGGATTTCTCATCTTGAAGCAAGATATCCGGCAATATTGTTTAAACAGCAATTAACTGCTTGTGTGGAGAAGATTTTTGGCTTGATCCGTGATAATTTAAAGAAGGAATTATCTCCATTGTTGAGCTCATGTATTCAGGCACCAAAAGCTGCACGAGTACATGCTGGGAAGTCTTCTAGATCGCCTGGTGTTCCTCAGCCATCTACTAGTAGTCCATGGGATAACATAATAAAGTTTTTGGATTCTTTGATGAGTCGTTTACGTGAGAATCATGTACCGTCTTTCTTCATTCGTAAATTGATTACTCAGGTGTTCTCGTTCATCAACATTTCACTTTTTAATAGCCTTCTTCTACGACGTGAATGTTGCACGTTTTCAAATGGGGAGTACGTAAAATCTGGTCTTGCAGAACTAGAGAAGTGGATTGGCAATGCAACAGATGAGTATTCAGGGACCTCTTGGCACGAGCTAAACTATATAAGGCAAGCTGTCGGGTTTCTGGTAATACACCAGAAGCGAAAGAAATCTCTAGAAGAGATAAGACAGGATCTTTGCCCAGCATTGACAGTGAGACAAATTTATCGCATTAGTACTATGTATTGGGATGATAAATACGGGACTCAGAGTGTGTCAAACGAGGTGGTTGCTCAAATGAGGGAAATTCTAAACAAGGACAATCAGAACTTAACCTCAAATTCATTTTTATTGGATGATGATCTAAGCATCCCATTCTCTACCGAAGACATCGACATGGCTCTTCCGGCCATTGAACCTTCAGACATCGAACCTCCCACTTTCCTGTCTGAATTTCCCTGTGTGCAGTTTCTGGTTGAGCCGCAAAAGTAG 4548 40.92 MSLRKGSKVWVEDRDFAWVAAEVLDFVAKQVRVSTATGKKVLALPEKLLPRDADEDDHGGVDDMTKLTYLNEPGVLYNLQRRYSLNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRASGDNRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTNGRISGAAIRTYLLERSRVVQITNPERNYHCFYQLCASGRDAEKYKLDHPSHFRYLNQSKTYELDGVSNAEEYIRTRRAMDIVGISHEDQEAIFRTLAAILHLGNVEFSPGKEYDSSVLKDEKSSFHLGVASNLLMCDSNLLVLALCTRSIQTREGIIVKALDCEGAVASRDALAKTVYSRLFDWLVDKINQSVGQDLNSQFQIGLLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIGLLDEACMFPRSTHETFSTKLFQNFRTHPRLERTKFSETDFTLSHYAGKVTYHTDTFLDKNRDYVVVEHCNLLASSRCNFVAGLFSSLPEESSRSSYKFSSVASRFKQQLQALMETLNSTEPHYVRCVKPNSLNRPQKFENLSILHQLRCGGVLEAVRISLAGYPTRRTYAEFIDRFGLLAPELVDGSYDERLITEKILEKLKLKNFQLGRTKVFLRAGQIGILDARRAEVLDNAAKCIQRRLRTYHARKDFLLMRSTAIALQAYCRGCLARKFYVAKRESNAATTIQKYIRRWFFRNIYLELYSAALTIQSGIRGFATRNRFLHDRRNKAAVLIQARWRTFKVRAIFHRHQASIIAIQCRWRQKLAKRELRRLKQEANEAGALRLAKNKLEKQLEDLTWRLHLEKRLRASNEEAKSNEILKLQKMLQSSSLELDAAKLAAINECNKNAVLQNQVELLSKEKYAFEREMVAVVELRKENAFLKSALDAMEKRNSALEVKLVEAQKEGSHTVEKLQDVEQKCSKLQQNVKSLEEKLSILEDENHVLRQRALTATPRSNRPNFARALSEKSSGVLVPNADRKTLFESPTPTKLVAPFSQGLSESRRTKLTVERHQENYEVLSRCIKENLGFKGGKPLAACIIYKCLLNWHAFESERTVIFDYIIEGINDALKSGDENTTLPYWLSNASALLCLLQRNLKSNGFLSAASQRSTGSTGLASRISQGLKSPFKYIGFEDGISHLEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLSSCIQAPKAARVHAGKSSRSPGVPQPSTSSPWDNIIKFLDSLMSRLRENHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATDEYSGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVAQMREILNKDNQNLTSNSFLLDDDLSIPFSTEDIDMALPAIEPSDIEPPTFLSEFPCVQFLVEPQK* 1516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18024337 18054908 - CsaV3_6G031920.1 Csa06g02004 533631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02004 1515 ProSiteProfiles Dilute domain profile. 1159 1458 IPR002710 -
Csa06g02004 1515 PANTHER PROTEIN OPAQUE1-LIKE 3 1512 - -
Csa06g02004 1515 Coils Coil 972 1006 - -
Csa06g02004 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 776 IPR027417 -
Csa06g02004 1515 ProSiteProfiles Myosin motor domain profile. 59 729 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa06g02004 1515 SMART MYSc_2a 53 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa06g02004 1515 Pfam Myosin head (motor domain) 61 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa06g02004 1515 Pfam IQ calmodulin-binding motif 734 752 IPR000048 GO:0005515
Csa06g02004 1515 Pfam IQ calmodulin-binding motif 805 823 IPR000048 GO:0005515
Csa06g02004 1515 Pfam IQ calmodulin-binding motif 759 773 IPR000048 GO:0005515
Csa06g02004 1515 Pfam IQ calmodulin-binding motif 782 800 IPR000048 GO:0005515
Csa06g02004 1515 Pfam IQ calmodulin-binding motif 830 848 IPR000048 GO:0005515
Csa06g02004 1515 Gene3D - 664 730 - -
Csa06g02004 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 878 IPR027417 -
Csa06g02004 1515 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa06g02004 1515 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa06g02004 1515 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa06g02004 1515 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa06g02004 1515 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa06g02004 1515 Coils Coil 1014 1048 - -
Csa06g02004 1515 Gene3D - 435 620 - -
Csa06g02004 1515 CDD MyosinXI_CBD 1110 1481 IPR037975 GO:0007015
Csa06g02004 1515 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Csa06g02004 1515 Coils Coil 864 908 - -
Csa06g02004 1515 CDD MYSc_Myo11 73 717 IPR036018 -
Csa06g02004 1515 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Csa06g02004 1515 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Csa06g02004 1515 Gene3D Kinesin motor domain 62 659 IPR036961 -
Csa06g02004 1515 SMART iq_5 850 872 IPR000048 GO:0005515
Csa06g02004 1515 SMART iq_5 779 801 IPR000048 GO:0005515
Csa06g02004 1515 SMART iq_5 754 776 IPR000048 GO:0005515
Csa06g02004 1515 SMART iq_5 731 753 IPR000048 GO:0005515
Csa06g02004 1515 SMART iq_5 827 849 IPR000048 GO:0005515
Csa06g02004 1515 SMART iq_5 802 824 IPR000048 GO:0005515
Csa06g02004 1515 ProSiteProfiles IQ motif profile. 803 832 IPR000048 GO:0005515
Csa06g02004 1515 ProSiteProfiles IQ motif profile. 828 857 IPR000048 GO:0005515
Csa06g02004 1515 Gene3D - 249 306 - -
Csa06g02004 1515 Pfam DIL domain 1334 1437 IPR002710 -
Csa06g02004 1515 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa06g02004 1515 SMART DIL_2 1333 1440 IPR002710 -
Csa06g02004 1515 PANTHER MYOSIN 3 1512 - -
Csa06g02004 1515 Gene3D - 828 879 - -
Csa06g02004 1515 Gene3D - 731 780 - -
Csa06g02004 1515 Gene3D - 781 827 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02081 Csa-Chr5:24121425 Csa06g02004 Csa-Chr6:18024337 0 dispersed
Csa06g02004 Csa-Chr6:18024337 Csa07g02070 Csa-Chr7:19990490 0 dispersed
Csa06g02004 Csa-Chr6:18024337 Csa06g00724 Csa-Chr6:5908642 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02004 K10357 - csv:101210527 2956.01