Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02014 ATGGACGGCGGTGCTCCGTACAATCCACGTACTGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATCAAAGCTCTCACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCGAGTGAGCAATGGGAAGTCAATTTACCTGCGGAAGAGGTGCCGCCAGAGCTCCCAGAACCTGCACTTGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCGGTTCATAGTGATGTTTGGCTTCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGGTTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAACGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATTCAAAGCGGAGTTCTGAACCTCAAATAAAAACTACCAAAGCTGTTCAGTCGAAGGACGAGGAAGAGGAAGGCGGCTTGGAAGAAGAAGAAGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCAGACGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTTCATGGGAAATGTGTGAAGATCACTCCGGCAAGAGCCGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAATCCGACCCTGA 765 43.53 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNSKRSSEPQIKTTKAVQSKDEEEEGGLEEEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18140076 18144310 + CsaV3_6G032020.1 Csa06g02014 533641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02014 254 CDD PHD_AL_plant 200 250 IPR044104 -
Csa06g02014 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Csa06g02014 254 MobiDBLite consensus disorder prediction 145 174 - -
Csa06g02014 254 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Csa06g02014 254 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 254 - -
Csa06g02014 254 MobiDBLite consensus disorder prediction 145 194 - -
Csa06g02014 254 Pfam PHD-finger 201 250 IPR019787 -
Csa06g02014 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Csa06g02014 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Csa06g02014 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Csa06g02014 254 PANTHER CPG BINDING PROTEIN 4 254 IPR045104 GO:0006355|GO:0042393
Csa06g02014 254 SMART PHD_3 200 248 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02014 - - - csv:101208889 472.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02014 Csa-Chr6:18140076 Csa07g02370 Csa-Chr7:21860290 2.70E-135 dispersed
Csa06g02014 Csa-Chr6:18140076 Csa05g00818 Csa-Chr5:5926088 4.98E-117 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00676 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 6.2e-114 407.1
Csa06g02014 . 9 251 Alfin-like Transcription Factor Family AT1G14510 75.7 1.3e-95 346.3
Csa07g02370 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.9 6.1e-93 337.4
Csa03g03069 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.0 1.9e-78 289.3
Csa05g00818 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.2 1.9e-78 289.3
Csa06g02014 . 1 253 Alfin-like Transcription Factor Family AT5G26210 79.1 2.3e-108 388.7
Csa07g02370 . 1 250 Alfin-like Transcription Factor Family AT5G26210 64.5 8.3e-98 353.6
Csa03g00676 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 1.2e-93 339.7
Csa05g00818 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.7 4.1e-81 298.1
Csa03g03069 . 8 241 Alfin-like Transcription Factor Family AT5G26210 58.1 1.0e-79 293.5
Csa06g02014 . 1 253 Alfin-like Transcription Factor Family AT3G42790 74.7 6.0e-101 364.0
Csa07g02370 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.5 9.0e-97 350.1
Csa03g00676 . 9 256 Alfin-like Transcription Factor Family AT3G42790 71.8 2.8e-90 328.6
Csa05g00818 . 7 240 Alfin-like Transcription Factor Family AT3G42790 60.6 4.8e-82 301.2
Csa03g03069 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.3 6.5e-79 290.8
Csa05g00818 . 1 240 Alfin-like Transcription Factor Family AT5G05610 77.2 3.3e-112 401.4
Csa03g03069 . 1 241 Alfin-like Transcription Factor Family AT5G05610 75.2 5.4e-107 384.0
Csa07g02370 . 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 7.8e-90 327.0
Csa06g02014 . 8 253 Alfin-like Transcription Factor Family AT5G05610 63.8 5.1e-89 324.3
Csa03g00676 . 9 254 Alfin-like Transcription Factor Family AT5G05610 61.8 3.2e-83 305.1
Csa05g00818 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.1 1.6e-95 345.9
Csa03g03069 . 43 241 Alfin-like Transcription Factor Family AT3G11200 77.3 1.9e-88 322.4
Csa07g02370 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.8 3.4e-74 275.0
Csa06g02014 . 44 253 Alfin-like Transcription Factor Family AT3G11200 65.6 1.7e-73 272.7
Csa03g00676 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 7.4e-69 257.3
Csa03g00676 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Csa06g02014 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.1e-65 245.0
Csa07g02370 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.0e-63 238.8
Csa03g03069 . 8 135 Alfin-like Transcription Factor Family AT2G02470 74.6 9.6e-54 207.2
Csa05g00818 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.3e-53 206.8
Csa06g02014 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 6.2e-74 273.9
Csa07g02370 . 1 162 Alfin-like Transcription Factor Family AT5G20510 74.5 5.1e-68 254.2
Csa03g00676 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.4e-67 250.4
Csa05g00818 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-52 203.0
Csa03g03069 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 3.9e-52 201.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32047 PF12165 Alfin 2.10E-69 No_clan Csa TF