Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02014 | ATGGACGGCGGTGCTCCGTACAATCCACGTACTGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATCAAAGCTCTCACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCGAGTGAGCAATGGGAAGTCAATTTACCTGCGGAAGAGGTGCCGCCAGAGCTCCCAGAACCTGCACTTGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCGGTTCATAGTGATGTTTGGCTTCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGGTTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAACGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATTCAAAGCGGAGTTCTGAACCTCAAATAAAAACTACCAAAGCTGTTCAGTCGAAGGACGAGGAAGAGGAAGGCGGCTTGGAAGAAGAAGAAGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCAGACGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTTCATGGGAAATGTGTGAAGATCACTCCGGCAAGAGCCGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAATCCGACCCTGA | 765 | 43.53 | MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNSKRSSEPQIKTTKAVQSKDEEEEGGLEEEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP* | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 18140076 | 18144310 | + | CsaV3_6G032020.1 | Csa06g02014 | 533641 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02014 | 254 | CDD | PHD_AL_plant | 200 | 250 | IPR044104 | - | |
Csa06g02014 | 254 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 | |
Csa06g02014 | 254 | MobiDBLite | consensus disorder prediction | 145 | 174 | - | - | |
Csa06g02014 | 254 | SUPERFAMILY | FYVE/PHD zinc finger | 190 | 251 | IPR011011 | - | |
Csa06g02014 | 254 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 4 | 254 | - | - | |
Csa06g02014 | 254 | MobiDBLite | consensus disorder prediction | 145 | 194 | - | - | |
Csa06g02014 | 254 | Pfam | PHD-finger | 201 | 250 | IPR019787 | - | |
Csa06g02014 | 254 | ProSiteProfiles | Zinc finger PHD-type profile. | 198 | 250 | IPR019787 | - | |
Csa06g02014 | 254 | ProSitePatterns | Zinc finger PHD-type signature. | 201 | 247 | IPR019786 | - | |
Csa06g02014 | 254 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 249 | IPR013083 | - | |
Csa06g02014 | 254 | PANTHER | CPG BINDING PROTEIN | 4 | 254 | IPR045104 | GO:0006355|GO:0042393 | |
Csa06g02014 | 254 | SMART | PHD_3 | 200 | 248 | IPR001965 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g02014 | Csa-Chr6:18140076 | Csa07g02370 | Csa-Chr7:21860290 | 2.70E-135 | dispersed | |
Csa06g02014 | Csa-Chr6:18140076 | Csa05g00818 | Csa-Chr5:5926088 | 4.98E-117 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32047 | PF12165 | Alfin | 2.10E-69 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02014 | - | - | csv:101208889 | 472.626 |