Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02014 ATGGACGGCGGTGCTCCGTACAATCCACGTACTGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATCAAAGCTCTCACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCGAGTGAGCAATGGGAAGTCAATTTACCTGCGGAAGAGGTGCCGCCAGAGCTCCCAGAACCTGCACTTGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCGGTTCATAGTGATGTTTGGCTTCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGGTTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAACGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATTCAAAGCGGAGTTCTGAACCTCAAATAAAAACTACCAAAGCTGTTCAGTCGAAGGACGAGGAAGAGGAAGGCGGCTTGGAAGAAGAAGAAGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCAGACGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTTCATGGGAAATGTGTGAAGATCACTCCGGCAAGAGCCGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAATCCGACCCTGA 765 43.53 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNSKRSSEPQIKTTKAVQSKDEEEEGGLEEEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18140076 18144310 + CsaV3_6G032020.1 Csa06g02014 533641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02014 254 CDD PHD_AL_plant 200 250 IPR044104 -
Csa06g02014 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Csa06g02014 254 MobiDBLite consensus disorder prediction 145 174 - -
Csa06g02014 254 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Csa06g02014 254 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 254 - -
Csa06g02014 254 MobiDBLite consensus disorder prediction 145 194 - -
Csa06g02014 254 Pfam PHD-finger 201 250 IPR019787 -
Csa06g02014 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Csa06g02014 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Csa06g02014 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Csa06g02014 254 PANTHER CPG BINDING PROTEIN 4 254 IPR045104 GO:0006355|GO:0042393
Csa06g02014 254 SMART PHD_3 200 248 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02014 Csa-Chr6:18140076 Csa07g02370 Csa-Chr7:21860290 2.70E-135 dispersed
Csa06g02014 Csa-Chr6:18140076 Csa05g00818 Csa-Chr5:5926088 4.98E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32047 PF12165 Alfin 2.10E-69 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02014 - - csv:101208889 472.626