Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02025 ATGGAGGAAATGTCCCCAGCGGTTGTGGTGCCATTTAGGGTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAACTCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTGACTAAGGCTTCTGATGACCTGACTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGATTGGTATTACTGCAGTTTCGGTTATGAATGACAAGTGCGAAGGAGTTCCATTGTCGGTTGTGTTATCTCAAAATAATAGCAATTGGGGTGCGGCAGGCGAGACGATATCCCATGGAAGTGAGGAAGATGATTCTTTATCATTAGAGGGCGATCACATTTACGATAGCTCTTGTTCGCATTCAGTGATTAGTGAGACTAGCAGCATTTGTGGTGATGAATTTTTAGGTTCTGAGGCGTCTTCTTTTGATGCATTTGATTCTATCATTAATGCTAAGGACATTAGCAGCGTTGAGATTGCAGCTAAAGCCAATATTGAAGAGGCTAATGTTGAAAGTTTCGAGACTCAGATTGCAAGTTCTTCTTCTGCAGCAGCTAGCCTTGAAGAAGATGTTGGAGGTGGGATAGGTACTGCAGCATGTGATAACATGGTCCTTCAGCTGCCTCTTGAGAAAAAGGCAAGCGAACCAGTTGGTCGAAGTGTTTTTGAGGTAGATTGTGTACCTCTTTGGGGATATACATCGGTCTGTGGAAGAAGACCTGAGATGGAAGATGCAGCGGCAACCGTACCTAGGTTTTCAGAACTTCCTGTCCAAATGCTTGTTGGCGACCGAGTTCTTGATGGCTCAAACAAGGCTATAGCTCACCAAACCGTTCATTTTTTTGGGGTTTACGATGGTCATGGTGGCTCTCAGGTCGCAAATTTTTGTCGTGAACGTATGCACTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCACGATATAGCTGTTGGCAACATGAAGGATAATTGCCAAGAACTATGGAGAAAGGCATTCACCAACTGTTTTCTAAAAGTTGATGCAGAAATTGGAGGAGGACCCGGTGTTGAGCCCGTTGCGCCAGAAACTGTTGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAGGAGCCAATGGCATTGTCCGTGGATCATAAACCAAATAGAGCAGATGAATATGAAAGGATTGAGGCTGCTGGAGGAAAGGTCATACAGTGGAACGGACACCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATTGGTGATAGATACTTGAAACCATGGATCATCCCAGAGCCAGAAGTAATGTTTGTCCCTCGAGCGAAAGATGACGAATGCCTCGTTCTAGCCAGTGATGGTTTATGGGACGTGATGACGAATGAAGAAGTATGTGACCTGGCTCGAAGACGAATCCTACTCTGGCACAAGAAGAATGGTGTCAGTTTACCTTCTGAGAGGGGGTTGGGGATCGATCCTGCAGCCCAAGCAGCCGCAGAATACCTCTCAAACCGAGCTCTCCAAAAGGGCAGCAAAGACAACATCACGGTAATCGTGATTGATTTAAAAACTCAAAGGAAGTTCAAGACAAAATCATAA 1662 44.83 MEEMSPAVVVPFRVGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDDLTEVGSDDCKSSNGEEEIGITAVSVMNDKCEGVPLSVVLSQNNSNWGAAGETISHGSEEDDSLSLEGDHIYDSSCSHSVISETSSICGDEFLGSEASSFDAFDSIINAKDISSVEIAAKANIEEANVESFETQIASSSSAAASLEEDVGGGIGTAACDNMVLQLPLEKKASEPVGRSVFEVDCVPLWGYTSVCGRRPEMEDAAATVPRFSELPVQMLVGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKHDIAVGNMKDNCQELWRKAFTNCFLKVDAEIGGGPGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNRADEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFVPRAKDDECLVLASDGLWDVMTNEEVCDLARRRILLWHKKNGVSLPSERGLGIDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKTQRKFKTKS* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18188911 18194068 - CsaV3_6G032130.1 Csa06g02025 533652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02025 553 SUPERFAMILY PP2C-like 236 544 IPR036457 -
Csa06g02025 553 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 120 552 - -
Csa06g02025 553 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169
Csa06g02025 553 SMART PP2C_4 229 541 IPR001932 -
Csa06g02025 553 CDD PP2Cc 241 543 IPR001932 -
Csa06g02025 553 Gene3D - 226 553 IPR036457 -
Csa06g02025 553 PANTHER ALPHABET, ISOFORM E-RELATED 120 552 - -
Csa06g02025 553 Pfam Protein phosphatase 2C 266 536 IPR001932 -
Csa06g02025 553 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01653 Csa-Chr3:12341428 Csa06g02025 Csa-Chr6:18188911 2.02E-76 dispersed
Csa03g04066 Csa-Chr3:35595281 Csa06g02025 Csa-Chr6:18188911 0 dispersed
Csa06g02025 Csa-Chr6:18188911 Csa03g02203 Csa-Chr3:19119262 1.19E-46 dispersed
Csa06g02025 Csa-Chr6:18188911 Csa06g00134 Csa-Chr6:877776 2.73E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02025 K14497 - csv:101207918 1086.25