Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02026 ATGTCTCCCTCCTCATATCCACCAGAAGATGGGATTCCCTTGAACACCACGGCGGTCGCCATTGACAAGGATAAAAACAGCCATCACGCTGTACGATGGGCTATTGATCATTTGGTCATTAGCAATCCACTTATCATTCTCATTCATGTTAGGCATAAAGCTAATCAGGGTGCGAGCGATTCTGAAAATGGCGAAACTGATGCCCAGCAGCTATTTGTTCCTTACCGTGGATATTGTGCTCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGATCCTGATATTTCCAAAGCGCTTGTTGACTACGTTCATAAGAATTGCATCAACAGCTTTGTAGTTGGAGCTTCAACAAGAAGTGCTTTAGCAAGGAAATTTAAAGCCCCCGATGTGCCAACCAGCATAATAAAAACTGCCCCAGAATTTTGTTCTGTTTATGTAATATCAAAAGCGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCAGTGGCTAATACTGCCATGCCACCAAGACAACCGTCGCCGCTTGGAGTTCAGCCAAATGGTCAATCAGACAGCAGCAGTGAACCAGAAAATGGAGCCAAATGCCAAGTAGCAAAGGAAGGATGGAAAAGTGCTGGTACAGAGAGAATGCTCGCTGAAAGGAATGGCGGTGGAAAACAAGCAAAAGCATTGACCCGCGAGAGGCCAAAAACTTCTCCAACTAATATATCTTTGGAAAACATAGAGGTTCCAAATCGAGGGTCTAGGTCTTCATTTAGTCGTGATTCGATATCTGATGACAATATGATGACTGCACAAATGGCTTTTGGTTCAATGGATGTGACTGCTCAAAGTTTAGATTTCAGTGCTAACTCAAATTTGTCAATGGACTCTGCTGCCGGACAATCTACTCGGGAACTAGAGGCTGAGATGAAAAGATTGAAGTTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCAAGAGAACTAAGTCAGTGGAAGCAGGATGAGGCACGTAAGTTTGAGGAAGTCAGGCTAGCTGAAGAGGCTGCTCTTGCTATTGCCGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCAGAAATGAAGGCCAGACGAGAGGCAGAAGAGAAAAAACGAGCATTGAATGCTCTAGCTCAGAACGACGTCCGATATAGAAAATACACTATAGAGGAGATTGAGGAATCTACTGAAAAGTTCTCTGAAAAATTGAAGATTGGAGAAGGTGGATACGGTCCTGTTTATGGTGGCAAACTTGATCATACAGCTGTTGCGATTAAAGTTTTAAGACCTGACGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTTCTCTGTTGTATTAGACATCCAAACATGGTCCTTCTTCTTGGAGCATGCCCCGAGTATGGTTGCTTGGTATATGAGTACATGCATAATGGAAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATAGCCCTCCATTATCATGGAGACGACGATTCAAAATAGCTGCTGAAATTGCAACCGCACTCCTTTTTCTTCACCAAGCAAAGCCAGAACCGCTTGTGCATAGAGACCTTAAACCAGCTAACATTCTCCTGGACCGCAATTTTGTGAGCAAAATTAGTGATGTTGGCCTGGCACGGTTAGTCCCACCTTCTGTAGCTGATCAAGTCACACAATATCATCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCTGAGTACCAACAAACAGGGAAGTTGACGACAAAATCAGATATTTACTCGTTTGGAATAATGTTACTTCAAATTATTACTGCCAAGCCTCCAATGGGTCTGGCTCACCATGTGCAAAGGGCTATTGAGAAAGATAGGTTTGATGAGATGCTTGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCCACAAATTTTGCGAAGTTGGCATTGAAGTGCGCTGAACTGAGGAAGAGAGACAGGCCTGATCTTGGAACGCTTATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGGAGGAGTTCTGACAAACGTGAACACCGGAATCACTATTCACGCTCTTCTGCATCAAGTTCCAGTTCGAAGCCGCAGTCATCAAATGAGGATTCCAGAATTATTTATACCGACGAAGGAAGTTAG 2229 44.41 MSPSSYPPEDGIPLNTTAVAIDKDKNSHHAVRWAIDHLVISNPLIILIHVRHKANQGASDSENGETDAQQLFVPYRGYCARKGVQLKEVVLDDPDISKALVDYVHKNCINSFVVGASTRSALARKFKAPDVPTSIIKTAPEFCSVYVISKAKIISARAALRPVANTAMPPRQPSPLGVQPNGQSDSSSEPENGAKCQVAKEGWKSAGTERMLAERNGGGKQAKALTRERPKTSPTNISLENIEVPNRGSRSSFSRDSISDDNMMTAQMAFGSMDVTAQSLDFSANSNLSMDSAAGQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARREAEEKKRALNALAQNDVRYRKYTIEEIEESTEKFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNSPPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKDRFDEMLDPTISDCPLEEATNFAKLALKCAELRKRDRPDLGTLIVPELNRLRDIGRSSDKREHRNHYSRSSASSSSSKPQSSNEDSRIIYTDEGS* 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18198203 18203845 + CsaV3_6G032140.1 Csa06g02026 533653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02026 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 147 - -
Csa06g02026 742 Coils Coil 358 413 - -
Csa06g02026 742 Gene3D HUPs 10 148 IPR014729 -
Csa06g02026 742 MobiDBLite consensus disorder prediction 177 193 - -
Csa06g02026 742 MobiDBLite consensus disorder prediction 716 736 - -
Csa06g02026 742 SUPERFAMILY Protein kinase-like (PK-like) 415 690 IPR011009 -
Csa06g02026 742 ProSiteProfiles Protein kinase domain profile. 432 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02026 742 SMART serkin_6 432 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02026 742 MobiDBLite consensus disorder prediction 702 742 - -
Csa06g02026 742 Gene3D Transferase(Phosphotransferase) domain 1 505 723 - -
Csa06g02026 742 Coils Coil 298 318 - -
Csa06g02026 742 CDD STKc_IRAK 438 698 - -
Csa06g02026 742 MobiDBLite consensus disorder prediction 166 237 - -
Csa06g02026 742 CDD STK_N 16 150 - -
Csa06g02026 742 PANTHER OS02G0152300 PROTEIN 16 728 - -
Csa06g02026 742 Pfam Universal stress protein family 19 145 IPR006016 -
Csa06g02026 742 Gene3D Phosphorylase Kinase; domain 1 400 504 - -
Csa06g02026 742 Pfam Protein tyrosine and serine/threonine kinase 436 690 IPR001245 GO:0004672|GO:0006468
Csa06g02026 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Csa06g02026 742 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 728 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00483 Csa-Chr5:3136618 Csa06g02026 Csa-Chr6:18198203 7.88E-128 dispersed
Csa06g02026 Csa-Chr6:18198203 Csa07g02376 Csa-Chr7:21915512 0 dispersed
Csa06g02026 Csa-Chr6:18198203 Csa03g04417 Csa-Chr3:38540278 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78384 PF07714 PK_Tyr_Ser-Thr 7.30E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02026 - - csv:101203326 1330.08