Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02035 ATGGAGGAAGAGGAGTTCGGCGAGGCTATCCGACCGGAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAATGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTTGTTGATAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG 420 50.71 MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES* 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18259239 18268577 + CsaV3_6G032240.1 Csa06g02035 533662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02035 139 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 3 130 - -
Csa06g02035 139 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Csa06g02035 139 SUPERFAMILY Histone-fold 13 91 IPR009072 GO:0046982
Csa06g02035 139 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Csa06g02035 139 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01684 Csa-Chr6:14748774 Csa06g02035 Csa-Chr6:18259239 1.66E-07 dispersed
Csa06g02035 Csa-Chr6:18259239 Csa06g02481 Csa-Chr6:22102283 3.33E-09 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32049 PF00808 CBFD_NFYB_HMF 4.30E-20 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02035 - - csv:101207423 234.187