Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02035 ATGGAGGAAGAGGAGTTCGGCGAGGCTATCCGACCGGAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAATGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTTGTTGATAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG 420 50.71 MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES* 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18259239 18268577 + CsaV3_6G032240.1 Csa06g02035 533662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02035 139 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 3 130 - -
Csa06g02035 139 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Csa06g02035 139 SUPERFAMILY Histone-fold 13 91 IPR009072 GO:0046982
Csa06g02035 139 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Csa06g02035 139 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02035 - - - csv:101207423 234.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01684 Csa-Chr6:14748774 Csa06g02035 Csa-Chr6:18259239 1.66E-07 dispersed
Csa06g02035 Csa-Chr6:18259239 Csa06g02481 Csa-Chr6:22102283 3.33E-09 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00052 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 4.2e-88 321.2
Csa01g02790 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Csa07g00504 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.4e-53 204.1
Csa01g02790 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 6.4e-57 217.6
Csa07g00504 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.4e-49 191.0
Csa01g00052 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 6.9e-43 171.0
Csa01g02790 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 3.1e-61 231.9
Csa07g00504 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.0e-52 202.6
Csa01g00052 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.7e-51 199.5
Csa01g00052 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.4e-38 155.2
Csa01g00052 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 3.4e-80 295.0
Csa01g02790 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.3e-50 194.5
Csa07g00504 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.8e-49 193.0
Csa07g00504 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.1e-64 242.3
Csa01g00052 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 3.8e-50 194.9
Csa01g02790 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.6e-50 194.1
Csa06g02035 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 2.4e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32049 PF00808 CBFD_NFYB_HMF 4.30E-20 CL0012 Csa TF