Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02048 ATGGACGACGGAGGAGCTTCTCAGCCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTACCTCCACCACAGCATGACCCGGCGGCGCAACAGCAACATCAGCATCAGCCGCCGTCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGAGATTTATTCAGTATAATATATTTGGTAACATCTTTGAAGTTACGGCCAAGTACAAGCCTCCTATTATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTGCTCTCAACTCTGAGACGAACGAGCATGTGGCGATTAAGAAGATTGCTAATGCGTTTGATAACAAGATCGATGCTAAGAGAACTCTTCGTGAGATCAAGCTTCTTCGGCATATGGATCATGAAAACGTTGTTGCGATTAGGGATATCATACCTCCACCTCTAAGGGAAACATTTAATGATGTTTATATCGCATATGAGCTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCAGAGGAGCATTGTCAGTATTTCCTGTACCAGATACTTCGTGGATTGAAGTACATACATTCGGCTAATGTTCTGCACAGAGATTTGAAACCTTCCAATCTGCTATTAAATGCGAACTGCGACCTGAAAATATGCGATTTCGGACTTGCTCGTGTTACTTCTGAAACTGACTTCATGACAGAATATGTGGTTACTAGATGGTACCGTGCACCAGAGCTCTTACTTAATTCATCTGATTACACTGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTAATGGATCGGAAGCCCTTGTTTCCTGGTCGAGATCACGTGCATCAGTTACGCTTGCTTTTGGAGCTGATTGGCACTCCATCAGAGGCTGATCTTGGTTTTTTGAACGAGAATGCTAAAAGATACATACGGCAATTACCTCATTACCATCGTCAATCATTCACCGAAAAGTTTCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGACAGAGAATTACCGTTGAAGACGCTCTAGCTCATCCTTATTTGACTTCATTACACGACATTAGTGATGAGCCTGTCTGCATGACACCCTTCAGCTTTGATTTCGAGCAGCATGCGCTTACCGAGGAACAGATGAAAGAGCTGATCTATCTAGAGGCGCTTGCATTTAACCCCGAGTATCATCACCAATAA 1218 44.5 MDDGGASQPDDTVMSEAASVPPPQHDPAAQQQHQHQPPSMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYLEALAFNPEYHHQ* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18328621 18342561 + CsaV3_6G032360.1 Csa06g02048 533675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02048 405 CDD STKc_TEY_MAPK 65 400 - -
Csa06g02048 405 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02048 405 ProSitePatterns MAP kinase signature. 107 210 IPR003527 GO:0004707|GO:0005524|GO:0006468
Csa06g02048 405 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 34 403 - -
Csa06g02048 405 MobiDBLite consensus disorder prediction 25 43 - -
Csa06g02048 405 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 34 403 - -
Csa06g02048 405 SMART serkin_6 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02048 405 ProSitePatterns Protein kinases ATP-binding region signature. 78 102 IPR017441 GO:0005524
Csa06g02048 405 MobiDBLite consensus disorder prediction 1 46 - -
Csa06g02048 405 Pfam Protein kinase domain 77 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02048 405 SUPERFAMILY Protein kinase-like (PK-like) 77 365 IPR011009 -
Csa06g02048 405 Gene3D Transferase(Phosphotransferase) domain 1 156 384 - -
Csa06g02048 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Csa06g02048 405 Gene3D Phosphorylase Kinase; domain 1 55 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02345 Csa-Chr1:20622744 Csa06g02048 Csa-Chr6:18328621 0 dispersed
Csa06g00083 Csa-Chr6:532725 Csa06g02048 Csa-Chr6:18328621 0 dispersed
Csa06g01386 Csa-Chr6:11833552 Csa06g02048 Csa-Chr6:18328621 2.10E-119 dispersed
Csa06g02048 Csa-Chr6:18328621 Csa06g02422 Csa-Chr6:21605091 9.36E-116 dispersed
Csa06g03711 Csa-Chr6:29675646 Csa06g02048 Csa-Chr6:18328621 1.83E-55 dispersed
Csa06g02048 Csa-Chr6:18328621 Csa05g00251 Csa-Chr5:1523550 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78385 PF00069 Pkinase 3.40E-73 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02048 K14512 - csv:101204301 803.897