Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02080 ATGTCTTCCGCCGAGAAGGAAAGAGAGACCCAGGTTTACATGGCCAAACTCGCCGAGCAGGCCGAACGCTATGACGAAATGGTTGAGTGTATGAAGAATATTGCAAAACTTGACCTCGAACTAACTGTAGAGGAGAGGAACCTTCTTTCTGTGGGGTACAAAAATGTCATAGGTGCACGACGAGCCTCTTGGCGCATCATGTCTTCGATTGAGCAGAAAGAGGAGTCTAAGGGGAATGAGAACATTGTAAAATTGATAAAGGGTTACCGCCAAAAAGTGGAGGAGGAGCTTACAAAGATTTGTGGTGATATTCTCTCTATCATTGACAAGCATCTAGTCCCTCATTCATCCTCTGCAGAAGCCACTGTTTTCTACTACAAGATGAAAGGTGACTACTATCGTTATCTTGCTGAGTTCAAGACAGATCAAGATAGAAAAGAGGCTGCTGATCAGTCGTTGAAGGGATATGAGGCTGCATCAGGCACTGCTAATACCGAACTCCCATCAACCCACCCAATCCGTCTTGGCCTTGCCCTCAACTTTTCTGTCTTCTACTATGAGATTATGAATTCTCCTGAGAGAGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACCTTGAGTGAGGAATCATACAAGGACAGCACTCTGATCATGCAGCTGTTGAGAGACAATCTCACCCTCTGGACCTCCGATTTGCCTGAAGATGGCGGTGACGAAAACTTCAAAGCTGAGGAATCCAAACCTGCTGAACCTGAGGCCCAGCAAGGCAAATGA 795 45.91 MSSAEKERETQVYMAKLAEQAERYDEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNENIVKLIKGYRQKVEEELTKICGDILSIIDKHLVPHSSSAEATVFYYKMKGDYYRYLAEFKTDQDRKEAADQSLKGYEAASGTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENFKAEESKPAEPEAQQGK* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18583648 18586443 - CsaV3_6G033670.1 Csa06g02080 533707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02080 264 SMART 1433_4 8 249 IPR023410 -
Csa06g02080 264 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Csa06g02080 264 PANTHER BNAC03G57490D PROTEIN 4 256 - -
Csa06g02080 264 MobiDBLite consensus disorder prediction 242 258 - -
Csa06g02080 264 MobiDBLite consensus disorder prediction 238 264 - -
Csa06g02080 264 Pfam 14-3-3 protein 14 236 IPR023410 -
Csa06g02080 264 PANTHER 14-3-3 PROTEIN 4 256 IPR000308 -
Csa06g02080 264 Coils Coil 196 216 - -
Csa06g02080 264 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Csa06g02080 264 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Csa06g02080 264 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Csa06g02080 264 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Csa06g02080 264 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Csa06g02080 264 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Csa06g02080 264 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Csa06g02080 264 PIRSF 14-3-3 2 248 IPR000308 -
Csa06g02080 264 Gene3D - 1 249 IPR036815 -
Csa06g02080 264 Coils Coil 14 34 - -
Csa06g02080 264 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02506 Csa-Chr5:26677086 Csa06g02080 Csa-Chr6:18583648 2.39E-177 dispersed
Csa06g02080 Csa-Chr6:18583648 Csa07g00466 Csa-Chr7:3372382 9.65E-147 dispersed
Csa06g02080 Csa-Chr6:18583648 Csa02g02151 Csa-Chr2:19444483 5.89E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02080 - K06630 csv:101221858 513.842