Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02086 ATGCCGAGCATTTCGGCCCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATACGATTTAACTTCATATTTGGATGAGCATCCTGGTGGAGATGATGTTATTGTGGCTGCAACTGGCAGAGATGCCACGGATGATTTTGAAGATGCTGGTCATAGCAAAGATGCCAGGGAGTTGATGGAGAAGTTCTATATCGGCTTGCTTGATACATCTTCCTTGGATAGCCTAAAACTTGAAACGAATCAAGTAGACGGTTATGCAACTCGGGTTCAGACCTTGACAAAGCAATACTGGAAGGCCCCTGTTGCAGTAATTGGTATTTCTGTGGTACTTGGTTGGGCATACTTGCGCAAAAAGTGA 396 44.7 MPSISALYSIQEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGLLDTSSLDSLKLETNQVDGYATRVQTLTKQYWKAPVAVIGISVVLGWAYLRKK* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18617774 18620736 + CsaV3_6G033730.1 Csa06g02086 533713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02086 131 PANTHER CYTOCHROME B5 ISOFORM A 3 130 - -
Csa06g02086 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 85 IPR036400 -
Csa06g02086 131 PANTHER CYTOCHROME B5 3 130 - -
Csa06g02086 131 Gene3D - 3 86 IPR036400 -
Csa06g02086 131 SMART Cyt_b5_2 8 81 IPR001199 -
Csa06g02086 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Csa06g02086 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Csa06g02086 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Csa06g02086 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Csa06g02086 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Csa06g02086 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Csa06g02086 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00025 Csa-Chr5:116589 Csa06g02086 Csa-Chr6:18617774 1.35E-32 dispersed
Csa06g00897 Csa-Chr6:7204282 Csa06g02086 Csa-Chr6:18617774 1.10E-25 dispersed
Csa06g02086 Csa-Chr6:18617774 Csa04g01830 Csa-Chr4:17957732 2.23E-18 dispersed
Csa06g02086 Csa-Chr6:18617774 Csa03g01102 Csa-Chr3:8715763 5.40E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02086 K23490 - csv:101220127 263.077