Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02086 ATGCCGAGCATTTCGGCCCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATACGATTTAACTTCATATTTGGATGAGCATCCTGGTGGAGATGATGTTATTGTGGCTGCAACTGGCAGAGATGCCACGGATGATTTTGAAGATGCTGGTCATAGCAAAGATGCCAGGGAGTTGATGGAGAAGTTCTATATCGGCTTGCTTGATACATCTTCCTTGGATAGCCTAAAACTTGAAACGAATCAAGTAGACGGTTATGCAACTCGGGTTCAGACCTTGACAAAGCAATACTGGAAGGCCCCTGTTGCAGTAATTGGTATTTCTGTGGTACTTGGTTGGGCATACTTGCGCAAAAAGTGA 396 44.7 MPSISALYSIQEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGLLDTSSLDSLKLETNQVDGYATRVQTLTKQYWKAPVAVIGISVVLGWAYLRKK* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18617774 18620736 + CsaV3_6G033730.1 Csa06g02086 533713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02086 131 PANTHER CYTOCHROME B5 ISOFORM A 3 130 - -
Csa06g02086 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 85 IPR036400 -
Csa06g02086 131 PANTHER CYTOCHROME B5 3 130 - -
Csa06g02086 131 Gene3D - 3 86 IPR036400 -
Csa06g02086 131 SMART Cyt_b5_2 8 81 IPR001199 -
Csa06g02086 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Csa06g02086 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Csa06g02086 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Csa06g02086 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Csa06g02086 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Csa06g02086 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Csa06g02086 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02086 K23490 CYB5; cytochrome b5 - csv:101220127 263.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00025 Csa-Chr5:116589 Csa06g02086 Csa-Chr6:18617774 1.35E-32 dispersed
Csa06g00897 Csa-Chr6:7204282 Csa06g02086 Csa-Chr6:18617774 1.10E-25 dispersed
Csa06g02086 Csa-Chr6:18617774 Csa04g01830 Csa-Chr4:17957732 2.23E-18 dispersed
Csa06g02086 Csa-Chr6:18617774 Csa03g01102 Csa-Chr3:8715763 5.40E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
Csa05g00025 . 1 135 NADPH P450 reductases AT5G53560 77.8 2.6e-58 221.5
Csa03g01102 . 68 200 NADPH P450 reductases AT5G53560 69.2 6.2e-52 200.3
Csa02g00931 . 1 135 NADPH P450 reductases AT5G53560 66.7 9.9e-50 193.0
Csa03g02688 . 6 134 NADPH P450 reductases AT5G53560 64.3 1.9e-45 178.7
Csa03g01102 . 68 199 NADPH P450 reductases AT5G48810 64.9 5.6e-48 187.2
Csa02g00931 . 1 134 NADPH P450 reductases AT5G48810 61.8 1.8e-46 182.2
Csa05g00025 . 1 134 NADPH P450 reductases AT5G48810 60.3 4.5e-45 177.6
Csa03g02688 . 1 132 NADPH P450 reductases AT5G48810 62.2 7.6e-45 176.8
Csa03g01102 . 89 202 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Csa02g00931 . 13 135 NADPH P450 reductases AT2G32720 72.7 2.1e-47 185.3
Csa03g02688 . 21 132 NADPH P450 reductases AT2G32720 70.5 6.4e-41 163.7
Csa05g00025 . 22 133 NADPH P450 reductases AT2G32720 65.2 2.1e-39 158.7
Csa06g02086 . 1 130 NADPH P450 reductases AT1G26340 55.2 2.3e-38 155.2
Csa04g01877 . 2 282 NADPH P450 reductases AT5G17770 82.2 4.3e-132 467.6
Csa03g03663 CCT 2 281 NADPH P450 reductases AT5G17770 77.5 1.3e-125 446.0
Csa04g01228 . 6 279 NADPH P450 reductases AT5G17770 75.2 1.0e-117 419.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24