Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02088 ATGTCATCACACACCTTACTTCTCTATTTCCCCATTTCCATTTCCCAAAGCTTCGATGCTCTTCTCCTTTCCCTTCTCCTCCTCTCCCTTTTCACCTTCTTCCTCCACCCTGGCGGTTTCGCTTGGGCCATTTCCAAGTGCAAAACCACCGCTTCCTCCGCCATCCCCGGTCCTTCTGGCCTCCCATTCATCGGCCTCCTCCACATCTTCACTCTCTCTACTCCTCACAAATCCCTCTCTGCTCTCGCCAATCGATTTAAAGCGTACCCATTAATGGCTTTCTCTGTTGGCTTAACTCGCTTTGTGATTTCTAGTAATCCTGATGTTGCTAAAGAAATTCTTAATAGCCCTTCCTTTGCTGATAGACCTGTGAAAGAATCTGCTTATGAACTGCTTTTTCACAGAGCAATGGGGTTTGCTCCTTATGGTGAGTATTGGAGGAACTTGAGGAGGATTTCTGCTACTTATATGTTCAGTCCTAAGAGAATAGCTGGTTTTGAAGGGTTTAGGAAAGAAGTTGGGTTTAAAATGGTGAGGGAAATTGAGAAATCCATGGTTTTAAAAGGGGATGTTAGAGTTAAGGAGATTCTTCATTTTGGGTCTTTGAATAATGTGATGATGACTGTTTTTGGGAAATGTTATGAGTTTTGTAATGGCGAGAGAGATGGGCTTGAGCTTGAGGCGTTGGTTAAAGAAGGGTATGATTTGCTTGGTATTTTTAATTGGAGTGATCACTTTCCTTTGTTGGGATTCTTGGATTTACAAGGTGTGAGGAAAAGATGTAGATGTTTGGCTTCTAAAGTTAATGTATTTGTGGGGAAAATCATTGAGGAACATAGAATGAAGAGGGAAATCAAGGAATTTCATCAAGAAGAACAAGAACATAATAAAGATTTTGTTGATGTTCTGCTTGATTTGGAGAAAGATGACAAACTCTCAGATTCTGATATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGAACTGACACAGTAGCCATACTTCTAGAATGGATTTTAGCAAGAATGGTAATACATCCAGAAATCCAAACTAAAGCACAAAATGAAATCGATTCAGTAATAGACGAGAAATGGAGAGCCATTTCAGATAATGATATTCAAAAGCTTCCATATCTTCAAGCCATTGTGAAGGAATGTTTAAGAATGCACCCACCAGGGCCACTTCTATCATGGGCAAGACTAGCGGTAGCGGACGTACACGTCGACGGGAGGGTTATACCGGCCGGGACGACGGCAATGGTGAACATGTGGGCAATAACACATGATGAGAAGGTGTGGAAAGATGCAGAGAAATTTGATCCAAACAGATTCATGGAAGAAGAAATCAGTGTTATGGGAAGTGATTTGAGATTGGCTCCATTTGGGGCAGGGAGAAGAGTTTGTCCTGGAAAAGCAATGGGATTGGCTACTGTCCATCTCTGGTTGGCTCAGTTGCTTCAAGCTTACAAATGGATGCCTTGTTCTGATGAATCCACTAATGGTGTTGACTTGTCAGAGTGTCTTAAACTCTCAATGGAAATGAAAACTCCATTGGTTTGCAGAGCTGTTCCTAGGCCTGCTTGGTGA 1587 41.97 MSSHTLLLYFPISISQSFDALLLSLLLLSLFTFFLHPGGFAWAISKCKTTASSAIPGPSGLPFIGLLHIFTLSTPHKSLSALANRFKAYPLMAFSVGLTRFVISSNPDVAKEILNSPSFADRPVKESAYELLFHRAMGFAPYGEYWRNLRRISATYMFSPKRIAGFEGFRKEVGFKMVREIEKSMVLKGDVRVKEILHFGSLNNVMMTVFGKCYEFCNGERDGLELEALVKEGYDLLGIFNWSDHFPLLGFLDLQGVRKRCRCLASKVNVFVGKIIEEHRMKREIKEFHQEEQEHNKDFVDVLLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVIHPEIQTKAQNEIDSVIDEKWRAISDNDIQKLPYLQAIVKECLRMHPPGPLLSWARLAVADVHVDGRVIPAGTTAMVNMWAITHDEKVWKDAEKFDPNRFMEEEISVMGSDLRLAPFGAGRRVCPGKAMGLATVHLWLAQLLQAYKWMPCSDESTNGVDLSECLKLSMEMKTPLVCRAVPRPAW* 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18629600 18631509 - CsaV3_6G033750.1 Csa06g02088 533715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02088 528 Pfam Cytochrome P450 56 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS P450 superfamily signature 468 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 PANTHER CYTOCHROME P450 78A7-RELATED 1 525 - -
Csa06g02088 528 PANTHER CYTOCHROME P450 78A5 1 525 - -
Csa06g02088 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Csa06g02088 528 Gene3D Cytochrome P450 43 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02088 528 SUPERFAMILY Cytochrome P450 55 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01568 Csa-Chr2:14836015 Csa06g02088 Csa-Chr6:18629600 1.60E-168 dispersed
Csa06g02088 Csa-Chr6:18629600 Csa03g02763 Csa-Chr3:26495596 4.22E-84 dispersed
Csa05g02212 Csa-Chr5:24906086 Csa06g02088 Csa-Chr6:18629600 0 transposed
Csa06g00898 Csa-Chr6:7236157 Csa06g02088 Csa-Chr6:18629600 3.52E-177 transposed
Csa01g00614 Csa-Chr1:3922185 Csa06g02088 Csa-Chr6:18629600 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02088 K20619 - csv:101221468 1045.8