Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02092 ATGGGAAGGGGAAGAGTAGAGTTGAAGAAGATAGAGAACAAAATAAATCGACAAGTTACATTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAAGTTGCTTTGATCATCTTCTCCGCTCGTGGCAAACTCTATGAATTCTCAAGCTCTCCCAGTATAGCCAAGACACTGGAGAGGTATGAAAGGCATAGCTATGGTGCACTGGAAGCCTCCCTCCCTCCAAAGGACACTGAGAGATGGTATCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCTTTACAATATTCACAAAGACGATTTCTCGGAGAAGAACTGGATGATTTGGAGACTAAGGAATTGGACCAACTAGAAATTCAATTGGAAATGTCTCTAAAGCAAATTAGATCTACTAAGAGGCAAACGATGTTTGATCAATTATCTGATCTCCAAAAAAAGGAAGATAAACTGCTGGAAACAAATCAAGCTTTGAGGAAGAAGTTGGAGGAAAGTAGTGCAGCTATTCATCATACATCATGGGATTCTTCAGAGCCCAACAATTTGCAATACTGCAGACAACCTGAGGCCTTTCTTCAACTCAATAACAATATTATTGCATTGGAAAATAGTTACAATCCAACTGAAGTTACAAATGAAGAAAATGTTGTGAACTCTGGGGCAGATGGCAATGGTTTGTCTTCACATTGGATGCTGCTTTGA 729 39.37 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSARGKLYEFSSSPSIAKTLERYERHSYGALEASLPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLETKELDQLEIQLEMSLKQIRSTKRQTMFDQLSDLQKKEDKLLETNQALRKKLEESSAAIHHTSWDSSEPNNLQYCRQPEAFLQLNNNIIALENSYNPTEVTNEENVVNSGADGNGLSSHWMLL* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18659488 18664886 + CsaV3_6G033790.1 Csa06g02092 533719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02092 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa06g02092 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa06g02092 242 Coils Coil 150 177 - -
Csa06g02092 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Csa06g02092 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa06g02092 242 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g02092 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Csa06g02092 242 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g02092 242 Coils Coil 124 144 - -
Csa06g02092 242 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Csa06g02092 242 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Csa06g02092 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa06g02092 242 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 228 - -
Csa06g02092 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa06g02092 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa06g02092 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02027 Csa-Chr3:16256046 Csa06g02092 Csa-Chr6:18659488 2.28E-12 dispersed
Csa06g00820 Csa-Chr6:6576874 Csa06g02092 Csa-Chr6:18659488 7.91E-76 dispersed
Csa06g02092 Csa-Chr6:18659488 Csa06g03736 Csa-Chr6:29814029 2.89E-51 dispersed
Csa06g02092 Csa-Chr6:18659488 Csa06g02093 Csa-Chr6:18670207 1.29E-59 tandem
Csa01g00621 Csa-Chr1:3970082 Csa06g02092 Csa-Chr6:18659488 5.53E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32051 PF01486 K-box 1.20E-26 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02092 K09264 - csv:101220998 467.618