Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02093 ATGGGAAGAGGTAGGGTTCAATTGAAAAGGATTGAGAACAAAATAAACAGGCAAGTAACTTTCTCAAAAAGGAAAGCTGGATTACTGAAGAAGGCTCATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAACTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTTGAACGGTATGAGAGATATTCTTTTGTGGGAAGGCAACAAAATGCAGCTTCTGAATCTGAATTTTCTTATGAAAATTGGACTCTTGAATACTACAGACTCAAGTCCAAAGTCGAACTTCTACAACGAAACAACAGTCATTATATGGGAGAAGATTTGGATTCGTTGAGTGTCAAAGAACTGCAAAACTTGGAACAACAAATTGACACTGCACTTAAACATGTTCGAACCAGAAAAAACCAACTTATGTTTGAGTCCATCACTGACCTCCAAAAAAAGGTAAGAAATATAGAGGAGAACAATGTCCAACTGGCTAAGCAGATAAAGGAGAAAGAGAAGAGTGTAGCATTGGCACAACAAGCAGAATGGGAGCACCAGCAACAGCAGGGTTACAATGCTTTGTCTTTCTTATTCCCACCACCTCCTCATCCCTCTCTAAACATTGGGCTTGCAAGTTTTGATGGTCACCAATGA 672 39.14 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSFVGRQQNAASESEFSYENWTLEYYRLKSKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRTRKNQLMFESITDLQKKVRNIEENNVQLAKQIKEKEKSVALAQQAEWEHQQQQGYNALSFLFPPPPHPSLNIGLASFDGHQ* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18670207 18676422 + CsaV3_6G033800.1 Csa06g02093 533720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02093 223 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Csa06g02093 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa06g02093 223 Coils Coil 153 187 - -
Csa06g02093 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g02093 223 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Csa06g02093 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa06g02093 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa06g02093 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa06g02093 223 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 215 - -
Csa06g02093 223 Coils Coil 127 147 - -
Csa06g02093 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 215 - -
Csa06g02093 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa06g02093 223 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Csa06g02093 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa06g02093 223 Pfam K-box region 86 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g02093 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01008 Csa-Chr4:7827623 Csa06g02093 Csa-Chr6:18670207 2.70E-78 dispersed
Csa06g02093 Csa-Chr6:18670207 Csa06g03736 Csa-Chr6:29814029 9.68E-48 dispersed
Csa06g02092 Csa-Chr6:18659488 Csa06g02093 Csa-Chr6:18670207 1.29E-59 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32052 PF01486 K-box 1.20E-28 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02093 K09264 - csv:101219414 424.861