Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02106 | ATGAGAACGGGGAAAAGCAATCAGGAAGACGACGAGTACGATGAGGATGAGCTGGTTGGTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTATTAGTAGCATCGGCAACAGCAAAGATGCGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTGACAGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGTGATCAAAAGAGAGACACTGCCTCGTTTTTATTGGAGGTGATTGAGTATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGCTAATACCATGGAGGAACAGTCATTGGCGCATGCAGACTTTTGTTGGGCATCAACAATCTGTAAAAAATGGTTCTGCTTCAGGACCAACTTATTCTGGGAAGTTTGATGACAACAACATTTCTATTTCACCAGCCATGCTTGCAAGCTCACAAAATCCTCTCGACTCCCACTCTGGCAGAGATATTCTACAGGAAGCAGACATAACAAATAAAGTTCCACATCCTATGTCTCTGGAAGGAAATATGCATGCTTCTATTCGTAGCGACACTGTTCTTGATCACTCTCTCCACATCCCAATTTCTGATCCACAGGCAACAGAGTGTCCCATCACCAACAATGCATCAAACCAACCAGAAGAGATGGGTATTGAAGGGGGGACAATAAGCGTTTCAAGTGTTTATTCAGAAGGGTTTATGAACAGCTTGGCTCAAGCTTTGCAGAGTACTGGACTGGATTTGTCACAAGCTAGCATCTCTGTTCAGATTGATCTGGGCAAGAGAGCAAATAAGGGGATGCCATTTGGAACGCCTATTTTTAAGGAAACTGGAAATCCTTCCTCCAACCACCCAGCAATGGCAAATGTAGGGGACCTGGGCAGCGGAGATGACTCAGAACAAGCAAAAAAGCGGCTAAGGACATGA | 999 | 44.54 | MRTGKSNQEDDEYDEDELVGKREGPSSTSNAISSIGNSKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHQQSVKNGSASGPTYSGKFDDNNISISPAMLASSQNPLDSHSGRDILQEADITNKVPHPMSLEGNMHASIRSDTVLDHSLHIPISDPQATECPITNNASNQPEEMGIEGGTISVSSVYSEGFMNSLAQALQSTGLDLSQASISVQIDLGKRANKGMPFGTPIFKETGNPSSNHPAMANVGDLGSGDDSEQAKKRLRT* | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 18737868 | 18742274 | - | CsaV3_6G033930.1 | Csa06g02106 | 533733 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02106 | 332 | Pfam | Helix-loop-helix DNA-binding domain | 51 | 100 | IPR011598 | GO:0046983 | |
Csa06g02106 | 332 | Gene3D | - | 47 | 119 | IPR036638 | GO:0046983 | |
Csa06g02106 | 332 | CDD | bHLH_AtBIM_like | 48 | 124 | - | - | |
Csa06g02106 | 332 | PANTHER | TRANSCRIPTION FACTOR BIM2 | 1 | 332 | - | - | |
Csa06g02106 | 332 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 47 | 119 | IPR036638 | GO:0046983 | |
Csa06g02106 | 332 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Csa06g02106 | 332 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 1 | 332 | IPR044295 | GO:0003700|GO:0006351|GO:0046983 | |
Csa06g02106 | 332 | SMART | finulus | 55 | 105 | IPR011598 | GO:0046983 | |
Csa06g02106 | 332 | MobiDBLite | consensus disorder prediction | 298 | 332 | - | - | |
Csa06g02106 | 332 | MobiDBLite | consensus disorder prediction | 23 | 43 | - | - | |
Csa06g02106 | 332 | MobiDBLite | consensus disorder prediction | 44 | 62 | - | - | |
Csa06g02106 | 332 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 49 | 99 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00327 | Csa-Chr1:2026829 | Csa06g02106 | Csa-Chr6:18737868 | 1.11E-70 | dispersed | |
Csa04g01001 | Csa-Chr4:7769516 | Csa06g02106 | Csa-Chr6:18737868 | 3.70E-47 | dispersed | |
Csa06g02106 | Csa-Chr6:18737868 | Csa06g02951 | Csa-Chr6:25541506 | 1.45E-09 | dispersed | |
Csa01g00628 | Csa-Chr1:4002735 | Csa06g02106 | Csa-Chr6:18737868 | 5.88E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32053 | PF00010 | HLH | 1.80E-13 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02106 | - | - | csv:101217750 | 654.825 |