Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02106 ATGAGAACGGGGAAAAGCAATCAGGAAGACGACGAGTACGATGAGGATGAGCTGGTTGGTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTATTAGTAGCATCGGCAACAGCAAAGATGCGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTGACAGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGTGATCAAAAGAGAGACACTGCCTCGTTTTTATTGGAGGTGATTGAGTATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGCTAATACCATGGAGGAACAGTCATTGGCGCATGCAGACTTTTGTTGGGCATCAACAATCTGTAAAAAATGGTTCTGCTTCAGGACCAACTTATTCTGGGAAGTTTGATGACAACAACATTTCTATTTCACCAGCCATGCTTGCAAGCTCACAAAATCCTCTCGACTCCCACTCTGGCAGAGATATTCTACAGGAAGCAGACATAACAAATAAAGTTCCACATCCTATGTCTCTGGAAGGAAATATGCATGCTTCTATTCGTAGCGACACTGTTCTTGATCACTCTCTCCACATCCCAATTTCTGATCCACAGGCAACAGAGTGTCCCATCACCAACAATGCATCAAACCAACCAGAAGAGATGGGTATTGAAGGGGGGACAATAAGCGTTTCAAGTGTTTATTCAGAAGGGTTTATGAACAGCTTGGCTCAAGCTTTGCAGAGTACTGGACTGGATTTGTCACAAGCTAGCATCTCTGTTCAGATTGATCTGGGCAAGAGAGCAAATAAGGGGATGCCATTTGGAACGCCTATTTTTAAGGAAACTGGAAATCCTTCCTCCAACCACCCAGCAATGGCAAATGTAGGGGACCTGGGCAGCGGAGATGACTCAGAACAAGCAAAAAAGCGGCTAAGGACATGA 999 44.54 MRTGKSNQEDDEYDEDELVGKREGPSSTSNAISSIGNSKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHQQSVKNGSASGPTYSGKFDDNNISISPAMLASSQNPLDSHSGRDILQEADITNKVPHPMSLEGNMHASIRSDTVLDHSLHIPISDPQATECPITNNASNQPEEMGIEGGTISVSSVYSEGFMNSLAQALQSTGLDLSQASISVQIDLGKRANKGMPFGTPIFKETGNPSSNHPAMANVGDLGSGDDSEQAKKRLRT* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18737868 18742274 - CsaV3_6G033930.1 Csa06g02106 533733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02106 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Csa06g02106 332 Gene3D - 47 119 IPR036638 GO:0046983
Csa06g02106 332 CDD bHLH_AtBIM_like 48 124 - -
Csa06g02106 332 PANTHER TRANSCRIPTION FACTOR BIM2 1 332 - -
Csa06g02106 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983
Csa06g02106 332 MobiDBLite consensus disorder prediction 1 62 - -
Csa06g02106 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 332 IPR044295 GO:0003700|GO:0006351|GO:0046983
Csa06g02106 332 SMART finulus 55 105 IPR011598 GO:0046983
Csa06g02106 332 MobiDBLite consensus disorder prediction 298 332 - -
Csa06g02106 332 MobiDBLite consensus disorder prediction 23 43 - -
Csa06g02106 332 MobiDBLite consensus disorder prediction 44 62 - -
Csa06g02106 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00327 Csa-Chr1:2026829 Csa06g02106 Csa-Chr6:18737868 1.11E-70 dispersed
Csa04g01001 Csa-Chr4:7769516 Csa06g02106 Csa-Chr6:18737868 3.70E-47 dispersed
Csa06g02106 Csa-Chr6:18737868 Csa06g02951 Csa-Chr6:25541506 1.45E-09 dispersed
Csa01g00628 Csa-Chr1:4002735 Csa06g02106 Csa-Chr6:18737868 5.88E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32053 PF00010 HLH 1.80E-13 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02106 - - csv:101217750 654.825