Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02128 ATGTCTGCCCATAATCGTCGCCCTTCCTTTTCTTCCTCCACAACGTCCTCCTTGGCCAAACGCCAAGCGTCCTCGGCGTCTTCGTCCGACAATGTTGGAAAGGTTATGGCAGTTCCGCCACATTTGGCCAAGAAGCGAGCGCCACTTGGAAACCTAACGAATTTTAAGAATGTGTCTCATAGTGCAGCCAAGAGCTCTGGTCCGCCTCCTGTTATGGTGCCTTGTGCAACCAAAGCTGTAAAGGCCAGAAAGAGTTCCCCTGCAAGAACTCGCAGCACTAACTTGCCGGGGACCAATACAACCACAATGCTTGATGTCAAAACGACGAATGCAGTTGCTCCTAGCAACGTTACAGCTTTCTCAAGAACTGACGTCACGGCTGTCTCCAGTTGTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCGGTTTCCTTAGATGAAACTATATCCACTTGTGATTCTTTTAAGAGTCCCGACGTCGAGTACTTGGACAATACTGATGTCCCAGCTGTTGATTCTGTTGAAAGGAAAACTAAAAGCAGTCTCTGCATCTCAGGCCATGCACCAATTAGTTGTCAGCCACCAACTAAAGGTAGCATATGCAGTAGAGATGTACTTACAGAAATGGAAATAGATGACAACATTGTCGATGTTGATACCGATTTCATGGATCCGCAGCAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCTACAGATTTCATGGAGAAGATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGGTTGATTGGCTTGTGGAGGTAGCAGAAGAGTACAGGCTTGTGCCAGACACTCTATATTTGACTGTCAACTACATTGATCGCTTCCTATCTGGGAATTCGATGGATCGGCAACGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATATGTGCGCCTCAAGTGGAAGAATTTTGCTACATTACCGATAACACATATTTTAAAGAAGAGGTATTGGAAATGGAATCTTCTGTTTTGAATTACTTGAAGTTCGAAATGACAGCTCCAACACCGAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATCAGAGCACTGATGAGGTTCCATCAATGCAGTTGGAATGCTTGTCCAACTTCCTTGCCGAATTATCTCTTTTAGAATACAGTATGCTCTGCTACGCACCATCACTTGTAGCTGCGTCCGCAATCTTCTTGGCAAAGTTTATTCTTCTTCCAACTAAGAGACCATGGAATTCCACCTTGCAGCATTATACACATTATCAGCCATCCGATCTTGTCGACTGCGTTAAAGATTTACATGGCCTCTGCTGTAACAACACTCATAATTCTAGCTTACCAGCCATCAGAGAAAAATACAGCCAGCATAAGTACAAGCACGTGGCGAAGAAGTACTGCCCTCCGACGATACCACCGGAGTTCTTCCAGAATCAAACACAGTAA 1521 44.44 MSAHNRRPSFSSSTTSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSGPPPVMVPCATKAVKARKSSPARTRSTNLPGTNTTTMLDVKTTNAVAPSNVTAFSRTDVTAVSSCMDVSPSKSDGVSVSLDETISTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGHAPISCQPPTKGSICSRDVLTEMEIDDNIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILVDWLVEVAEEYRLVPDTLYLTVNYIDRFLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLEMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDQSTDEVPSMQLECLSNFLAELSLLEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHGLCCNNTHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19014362 19020781 - CsaV3_6G034150.1 Csa06g02128 533755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02128 506 PANTHER CYCLIN-A1-1 34 504 - -
Csa06g02128 506 PIRSF Cyclin_A_B_D_E 3 499 IPR039361 -
Csa06g02128 506 Pfam Cyclin, N-terminal domain 235 361 IPR006671 -
Csa06g02128 506 SUPERFAMILY Cyclin-like 364 496 IPR036915 -
Csa06g02128 506 CDD CYCLIN 362 460 IPR013763 -
Csa06g02128 506 PANTHER CYCLINS 34 504 IPR039361 -
Csa06g02128 506 Gene3D - 249 362 - -
Csa06g02128 506 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
Csa06g02128 506 MobiDBLite consensus disorder prediction 86 102 - -
Csa06g02128 506 ProSitePatterns Cyclins signature. 266 297 IPR006671 -
Csa06g02128 506 Pfam Cyclin, C-terminal domain 364 489 IPR004367 -
Csa06g02128 506 SMART Cyclin_C_2 364 493 IPR004367 -
Csa06g02128 506 SMART cyclin_7 368 461 IPR013763 -
Csa06g02128 506 SMART cyclin_7 271 355 IPR013763 -
Csa06g02128 506 MobiDBLite consensus disorder prediction 80 102 - -
Csa06g02128 506 MobiDBLite consensus disorder prediction 1 32 - -
Csa06g02128 506 Gene3D - 235 489 - -
Csa06g02128 506 CDD CYCLIN 265 354 IPR013763 -
Csa06g02128 506 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01916 Csa-Chr2:18053116 Csa06g02128 Csa-Chr6:19014362 2.12E-99 dispersed
Csa02g02345 Csa-Chr2:20822634 Csa06g02128 Csa-Chr6:19014362 8.12E-94 dispersed
Csa04g02456 Csa-Chr4:24614388 Csa06g02128 Csa-Chr6:19014362 1.90E-100 dispersed
Csa04g02698 Csa-Chr4:26118950 Csa06g02128 Csa-Chr6:19014362 2.12E-59 dispersed
Csa05g01127 Csa-Chr5:11499822 Csa06g02128 Csa-Chr6:19014362 3.02E-18 dispersed
Csa06g02128 Csa-Chr6:19014362 Csa07g00705 Csa-Chr7:5032351 2.53E-72 dispersed
Csa06g02128 Csa-Chr6:19014362 Csa07g02205 Csa-Chr7:20738344 6.49E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02128 K06627 - csv:101221569 1008.44