Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02130 ATGACAGATACAGGCGATACTCAGCCGTCTGAACAAGTCTGTAGCTTCTTCAGAAAACCCACCAAAAACAAAAACATCAGGAAGCGGACGGTTGATGAAGACGAAGAGGAGGACTCTAAAGCTGAGACTTCGTTTCTGCTAAATCAGAAGAAAGCCCCTAAGACTGAAAGCAAGCTTTATTTTTCTTCTGGGCCTTCTAAAAATTCATCGTCTAATGAGTCCAATGTGGAACCTAATAAACCAATTTTCCAATTTGAGTCTTCAAAGGAAATTCAAGTTCACCATGATAGCAGAGCAACTGCAACTCTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGGAAAGGCAAGAGCTCTGGTGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTTGATTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCTAGTGAAAAAGCTGGTGGAGCACATGGGCCGCTTAGAGCTTCTGCTCACATAAGAGCATCGGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCGTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAGGAAGTAGAGAAAGCAAGAAAGAGAAAATTAGCTATGAAATCTGATGATGGGGATGAGGATACTTCAGAACAAAGTGATGAAGATGAAGAAGATGCGTTGCCCTTTGCTTGTTTTATTTGTCGCGAGCCTTTTGTGGATCCTGTTGTGACAAAGTGCAAGCATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAGCCTACTCTTGGAATCTTTAACACGGCACATGAGATACGCAAAAGGATGGCACAGAGTAAATAA 969 42.93 MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLYFSSGPSKNSSSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKRMAQSK* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19035932 19042811 - CsaV3_6G034170.1 Csa06g02130 533757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02130 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 320 IPR013083 -
Csa06g02130 322 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872
Csa06g02130 322 MobiDBLite consensus disorder prediction 89 103 - -
Csa06g02130 322 ProSitePatterns Zinc finger RING-type signature. 278 287 IPR017907 -
Csa06g02130 322 MobiDBLite consensus disorder prediction 45 86 - -
Csa06g02130 322 CDD RING-HC_RNF113A_B 261 301 - -
Csa06g02130 322 Pfam Zinc finger, C3HC4 type (RING finger) 262 304 - -
Csa06g02130 322 SMART ring_2 263 300 IPR001841 -
Csa06g02130 322 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Csa06g02130 322 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 1 322 - -
Csa06g02130 322 MobiDBLite consensus disorder prediction 1 19 - -
Csa06g02130 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872
Csa06g02130 322 SUPERFAMILY RING/U-box 262 306 - -
Csa06g02130 322 MobiDBLite consensus disorder prediction 234 254 - -
Csa06g02130 322 ProSiteProfiles Zinc finger RING-type profile. 263 301 IPR001841 -
Csa06g02130 322 MobiDBLite consensus disorder prediction 1 103 - -
Csa06g02130 322 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Csa06g02130 322 PANTHER ZINC FINGER PROTEIN 183 1 322 IPR039971 -
Csa06g02130 322 Gene3D - 183 217 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32055 PF13920 zf-C3HC4_3 5.50E-09 CL0229 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02130 K13127 - csv:101221334 624.009