Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa06g02139 | ATGTCGGAAGTAATTTCCGTGATGGATATTGACGACGATAATGGCAATAACGAAGCTGAAAAGGCAGTCAAGGGAAAAAACGTTGCCAGTCCTGCCGCCGCACCCGAAGGCAAAGCGATACCCTGGGTTGAGAAGTTCCGGCCTAAGTCTCTCGCTGATGTTGCTGCTCACCGTGACATTGTTGACACCATCGACAAGCTGACGAGTGAAAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGTACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGGAAGCTTTATGGAACAAACTACCACAACATGATTTTGGAACTGAACGCATCAGATGATAGAGGGATAGATGTTGTTAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCGTCTGTAAAATTGGTACTGTTGGATGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGAAGAGTAATTGAGAAATACACAAAAAATACAAGGTTTGCTCTTATCTGTAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCCCCCCTTGATAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTCACTGAGGGTGGCTTAGCTGCTCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCCTTAAATATCCTGCAGTCAACGCACATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGGAACCCTATGCCCAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAGAGATGCCATCGAATATCAGAGTCCAGTTGATTAACGATTTGGCTGACATAGAGTACAGGATGACTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACAGGAGCTAGATCTGCTCTTGTTGGTGCTGCACAGTAG | 1092 | 43.68 | MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQLGSLISSFTGARSALVGAAQ* | 364 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 19120488 | 19132171 | - | CsaV3_6G034260.1 | Csa06g02139 | 533766 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa06g02139 | 363 | Gene3D | - | 264 | 359 | - | - | |
| Csa06g02139 | 363 | Pfam | Replication factor C C-terminal domain | 264 | 350 | IPR013748 | - | |
| Csa06g02139 | 363 | Gene3D | - | 202 | 263 | - | - | |
| Csa06g02139 | 363 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 264 | 352 | IPR008921 | GO:0003677|GO:0006260 | |
| Csa06g02139 | 363 | CDD | AAA | 60 | 198 | - | - | |
| Csa06g02139 | 363 | SMART | AAA_5 | 72 | 202 | IPR003593 | - | |
| Csa06g02139 | 363 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 36 | 358 | - | - | |
| Csa06g02139 | 363 | CDD | HLD_clamp_RFC | 203 | 261 | - | - | |
| Csa06g02139 | 363 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 40 | 257 | IPR027417 | - | |
| Csa06g02139 | 363 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 36 | 358 | - | - | |
| Csa06g02139 | 363 | Gene3D | - | 35 | 198 | IPR027417 | - | |
| Csa06g02139 | 363 | Pfam | ATPase family associated with various cellular activities (AAA) | 76 | 196 | IPR003959 | GO:0005524|GO:0016887 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g00353 | Csa-Chr3:2912245 | Csa06g02139 | Csa-Chr6:19120488 | 1.57E-70 | dispersed | |
| Csa04g00723 | Csa-Chr4:4935236 | Csa06g02139 | Csa-Chr6:19120488 | 8.39E-09 | dispersed | |
| Csa04g01779 | Csa-Chr4:17453127 | Csa06g02139 | Csa-Chr6:19120488 | 2.87E-60 | dispersed | |
| Csa06g02139 | Csa-Chr6:19120488 | Csa06g03254 | Csa-Chr6:27413046 | 6.99E-15 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa06g02139 | K10756 | - | csv:101217230 | 712.99 |