Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02139 ATGTCGGAAGTAATTTCCGTGATGGATATTGACGACGATAATGGCAATAACGAAGCTGAAAAGGCAGTCAAGGGAAAAAACGTTGCCAGTCCTGCCGCCGCACCCGAAGGCAAAGCGATACCCTGGGTTGAGAAGTTCCGGCCTAAGTCTCTCGCTGATGTTGCTGCTCACCGTGACATTGTTGACACCATCGACAAGCTGACGAGTGAAAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGTACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGGAAGCTTTATGGAACAAACTACCACAACATGATTTTGGAACTGAACGCATCAGATGATAGAGGGATAGATGTTGTTAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCGTCTGTAAAATTGGTACTGTTGGATGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGAAGAGTAATTGAGAAATACACAAAAAATACAAGGTTTGCTCTTATCTGTAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCCCCCCTTGATAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTCACTGAGGGTGGCTTAGCTGCTCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCCTTAAATATCCTGCAGTCAACGCACATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGGAACCCTATGCCCAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAGAGATGCCATCGAATATCAGAGTCCAGTTGATTAACGATTTGGCTGACATAGAGTACAGGATGACTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACAGGAGCTAGATCTGCTCTTGTTGGTGCTGCACAGTAG 1092 43.68 MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQLGSLISSFTGARSALVGAAQ* 364
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 19120488 19132171 - CsaV3_6G034260.1 Csa06g02139 533766
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02139 363 Gene3D - 264 359 - -
Csa06g02139 363 Pfam Replication factor C C-terminal domain 264 350 IPR013748 -
Csa06g02139 363 Gene3D - 202 263 - -
Csa06g02139 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 352 IPR008921 GO:0003677|GO:0006260
Csa06g02139 363 CDD AAA 60 198 - -
Csa06g02139 363 SMART AAA_5 72 202 IPR003593 -
Csa06g02139 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 36 358 - -
Csa06g02139 363 CDD HLD_clamp_RFC 203 261 - -
Csa06g02139 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Csa06g02139 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 36 358 - -
Csa06g02139 363 Gene3D - 35 198 IPR027417 -
Csa06g02139 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00353 Csa-Chr3:2912245 Csa06g02139 Csa-Chr6:19120488 1.57E-70 dispersed
Csa04g00723 Csa-Chr4:4935236 Csa06g02139 Csa-Chr6:19120488 8.39E-09 dispersed
Csa04g01779 Csa-Chr4:17453127 Csa06g02139 Csa-Chr6:19120488 2.87E-60 dispersed
Csa06g02139 Csa-Chr6:19120488 Csa06g03254 Csa-Chr6:27413046 6.99E-15 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02139 K10756 - csv:101217230 712.99