Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02147 ATGGAGTTGAAGAAAACAGAAGTTGAGGAGAAAGTAGAAGAAGAACACCACCACCATTTCCATGTATTGGCTGTTGATGATAGTCTAATTGATAGAAAGCTTTTGGAAAAGCTCTTAACAATTTCTTCATGTCAAGTTACCTGTGTTGAGTCTGGTGATAAAGCTCTTAGATATTTGGGCCTTCTTGATCATGATCTTGATCCATTTTCTTCTTCTTCATTTTCTTCCTCACAACTCTCCCAACATCAGGAAGTCAAAGTCAACCTAATCATGACAGATTTCTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAGCCATCGAGAATCAACATGTGTTTAGAAGAAGGCGCAGAGGAATTTCTTCTAAAGCCTCTTCAATTATCAGATGTCAAAAAGCTCGAGCCTCACCTTCAAAAATCCCTCACCCGTTGTGCTTCTGATCAACAAATCAAGGAACAACAAACAACACTTGGAATTGGAATCGGAATCGAAATTGACGACGAAAATAACTCGAAATTAGAAGAGAGTAAGAATAGCATTAATAATAACAATAATAATAATAGCATGAGCAAGAGAAAGGCAGCAACTGCAGAGCACTGTGAAGAAAGATCACGACCAAAACTGAAAGAATTGCAAGCTGGAGTGTAA 711 38.54 MELKKTEVEEKVEEEHHHHFHVLAVDDSLIDRKLLEKLLTISSCQVTCVESGDKALRYLGLLDHDLDPFSSSSFSSSQLSQHQEVKVNLIMTDFCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCASDQQIKEQQTTLGIGIGIEIDDENNSKLEESKNSINNNNNNNSMSKRKAATAEHCEERSRPKLKELQAGV* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19229914 19233770 - CsaV3_6G034340.1 Csa06g02147 533774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02147 236 MobiDBLite consensus disorder prediction 196 214 - -
Csa06g02147 236 MobiDBLite consensus disorder prediction 215 230 - -
Csa06g02147 236 MobiDBLite consensus disorder prediction 195 236 - -
Csa06g02147 236 Pfam Response regulator receiver domain 78 152 IPR001789 GO:0000160
Csa06g02147 236 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 5 233 - -
Csa06g02147 236 SMART REC_2 20 155 IPR001789 GO:0000160
Csa06g02147 236 Gene3D - 21 233 - -
Csa06g02147 236 CDD REC_typeA_ARR 23 154 - -
Csa06g02147 236 ProSiteProfiles Response regulatory domain profile. 21 159 IPR001789 GO:0000160
Csa06g02147 236 SUPERFAMILY CheY-like 19 153 IPR011006 -
Csa06g02147 236 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 233 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02855 Csa-Chr5:28884165 Csa06g02147 Csa-Chr6:19229914 5.63E-47 dispersed
Csa06g02147 Csa-Chr6:19229914 Csa05g00009 Csa-Chr5:54545 3.94E-10 dispersed
Csa06g02147 Csa-Chr6:19229914 Csa05g02375 Csa-Chr5:25975705 4.98E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32057 PF00072 Response_reg 3.60E-15 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02147 K14492 - csv:101216267 383.645