Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02169 ATGGCAGATCAGGTGCTGTCTAGTGCTTGCAGAGCTCTGAATTTGCTTTTGTTCGTTATTTTGACATCTAATTTGGTCAATGTAGCTTTCGTTTCCGCCAAATCAACTATAGAGCCATGTTCCAACTCCGATTCTTGCAATGCCCTGCTCGGTTACACTCTTTACACCGACCTCAAGGTGTCTGAAGTTGGTTCGCTCTTTCAAGTCGACCCCATTTCGATTCTCACTGCCAACGCCATAGATGTTTCATACCCAGATGTTGAAAATCACATTCTACCTTCGCAGCTCTTTATTAAAATCCCCATTTCTTGTTCTTGTGTTGATGGGATTCGTAAATCGGTTTCGACTCGGTACAAGACTCGCCCATCTGACACTCTCTCCTCGATTGCTGATTCCATCTACGCTGGTTTGGTCTCTTCAGATCAGATTCGGGAGGCTAATTCCATTTCGGACCCCTCTCTTCTCGATGTTGGACAGACTCTTGTTGTGCCACTTCCTTGTACTTGCTTTAATGGAACCGATAATTCGTTGCCTGCTATTTACTTGTCTTACGTTGTTCAACCTGAAGATACGTTAACTGGGATTGCTTTTAGATATTCCACTACTATCACTGACTTGATGGATGTTAATGCCATGGGCAATCCAGCGATTAAGGCTGGGGATATTTTGGCCGTTCCCTTGCCTGCTTGTGCATCTAAGTTTCCTTCATATGCCTCTGACTTTGGCTTGATTGTGCCCAATGGGAGCTATGCCATTACGGCAAGTCATTGTGTGCAATGTAGCTGTGGACCAGGGAACCTCAATATGTATTGCATGCCTGCTCCTTTTGCCGTTTCTTGTTCGAGTATGCAATGCAAAAATAGCAATCTAATGCTTGGGAACGTCACTGCACAGCAGAGCAGTGCAGGTTGCAATGTTACATCTTGTAGTTATGGTGGTTTTGTAAATGGCACCATATTGACGATGTTGTCTTCGAATCTTCAGCCTCGATGCCCTGGGCCACAGCAATTTCCCCCTCTTAAAGCCCCACCTACTACAGTAAGTAGGGATAAAAATTTTGCACCTGCACCTGCTCCTCAATTCGATGGCTCTGGATCACCTGCACCCAGTTCGGGATTGATCCCTTCAACAACTGGTTCTCTCCCTGGACTCCCGCCAGCCAGTGGCCCCATTGGTAGTACTTCAGGGATGAACTCAGCGCCTTCCACTGCTTCCTCATTGGTGAATCCATTAGCTAGTTTCCCTGCTGCCTTTCTGTTATTTATCCTCGTCAACTACATAATGTCATTTTCATTGTAA 1299 45.65 MADQVLSSACRALNLLLFVILTSNLVNVAFVSAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVGSLFQVDPISILTANAIDVSYPDVENHILPSQLFIKIPISCSCVDGIRKSVSTRYKTRPSDTLSSIADSIYAGLVSSDQIREANSISDPSLLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVQPEDTLTGIAFRYSTTITDLMDVNAMGNPAIKAGDILAVPLPACASKFPSYASDFGLIVPNGSYAITASHCVQCSCGPGNLNMYCMPAPFAVSCSSMQCKNSNLMLGNVTAQQSSAGCNVTSCSYGGFVNGTILTMLSSNLQPRCPGPQQFPPLKAPPTTVSRDKNFAPAPAPQFDGSGSPAPSSGLIPSTTGSLPGLPPASGPIGSTSGMNSAPSTASSLVNPLASFPAAFLLFILVNYIMSFSL* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19504830 19507863 - CsaV3_6G035550.1 Csa06g02169 533796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02169 432 SMART LysM_2 117 164 IPR018392 -
Csa06g02169 432 SMART LysM_2 183 226 IPR018392 -
Csa06g02169 432 Pfam LysM domain 184 226 IPR018392 -
Csa06g02169 432 Pfam LysM domain 118 164 IPR018392 -
Csa06g02169 432 Gene3D LysM domain 174 233 IPR036779 -
Csa06g02169 432 Gene3D LysM domain 112 173 IPR036779 -
Csa06g02169 432 SUPERFAMILY LysM domain 182 227 IPR036779 -
Csa06g02169 432 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 427 - -
Csa06g02169 432 ProSiteProfiles LysM domain profile. 182 225 IPR018392 -
Csa06g02169 432 SUPERFAMILY LysM domain 116 165 IPR036779 -
Csa06g02169 432 MobiDBLite consensus disorder prediction 364 383 - -
Csa06g02169 432 MobiDBLite consensus disorder prediction 333 402 - -
Csa06g02169 432 CDD LysM 116 163 IPR018392 -
Csa06g02169 432 CDD LysM 183 225 IPR018392 -
Csa06g02169 432 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Csa06g02169 432 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 15 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02169 - - - csv:101216338 851.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02169 Csa-Chr6:19504830 Csa07g00175 Csa-Chr7:1447399 2.42E-43 dispersed
Csa06g02169 Csa-Chr6:19504830 Csa06g02868 Csa-Chr6:24978876 3.20E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02169 . 20 395 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 75.1 2.5e-160 562.0
Csa06g02169 . 15 421 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 62.1 1.4e-137 486.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37