Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02174 ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTGGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAAGAATTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAAACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTAATGCGTGACATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTTCCAATTAAACGGTCACCTATGAGGTTACGATATATCGTACCTGAACAGAACGTTCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATTGTTTCCGATGACCAGTCAGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGCAATCCATTAATGAGTGAACTACATGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGAGGACGATTATGAGAATGTGGAGCTGCCACCAAGGCAATTAAAGGAAACGAAATCGGTTATTCCTCAACTAAGTGAAGCTTTACAAAAGCAGACAATTTCTATCAACAGTGATAACGCCCCAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGCTGTGGGGGATGTTACAAAGTTTAGAGAGCATTACAAGAGTGAGTGGCATAAGCATAATGTAAAGCGCAAAACCAAGAATCTTCCACCTCTGACCGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGATTCAGAGTCTGACCTGAAGGAGTATTCATTTTGA 1080 42.78 MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRCSTCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19598352 19602704 + CsaV3_6G035600.1 Csa06g02174 533801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02174 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Csa06g02174 359 Gene3D - 174 251 - -
Csa06g02174 359 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 231 IPR002140 GO:0042256
Csa06g02174 359 SUPERFAMILY beta-beta-alpha zinc fingers 287 329 IPR036236 -
Csa06g02174 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Csa06g02174 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Csa06g02174 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Csa06g02174 359 Gene3D - 100 172 IPR037188 -
Csa06g02174 359 Gene3D - 1 96 IPR036786 -
Csa06g02174 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Csa06g02174 359 PANTHER BNAANNG06530D PROTEIN 1 359 - -
Csa06g02174 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 359 IPR039100 -
Csa06g02174 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Csa06g02174 359 SMART ZnF_U1_5 295 329 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04394 Csa-Chr3:38350922 Csa06g02174 Csa-Chr6:19598352 3.63E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02174 K14574 - csv:101215380 721.85