Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02175 ATGGTACCTTCGGGGCCATCTACACCCATTGGTGGTGCGCAGTCTGTTTCACCATCGCTTTTGAGATCAAATTCTGGAATGATGGGAGCACAAGGGGGGCTGCCTTCACAGTCAGCTTTTCCTTCTCTTGTATCCCCTCGGACACAGTTTAACAGTATGAATATGCTTGGTAATACACCCAGTATGTCTTCTCTCCTAAATCAGTCATTTGTGAATGGAGTTCCGAATTCTGGGCCCTCAGGCCTTGGAAATAGCCAACGAGTAGGTATGGACGCTGGTTCTGAGTCAGATCCATTTTCACTCGTTGGCAATGGTGTGAACTTCAACAATACCCCTTCCTCATTGGTGACATCAAATACAGCAAACCCTGGTTCATCTAGTCAAGTTTCAGTACATCAATTTTCAAATCATTCTAGTGGCCAAATCTTACCCAATCAACAGCAATCACAGCAAATTGAACCCCAGAACTTCCAACATAGTCAGCATTCAATGCAACAGTTCGCTACGTCTAATAACACGCAGCAGTCACAGCAGCTGCAGCAGCAACAACAACATCAATTCCAACGAGGAAGCTTATGCAGTGCTGGACCTGTCAAGTTGGAACCTCAAATGAATAACAATGATCTCCAAGGACAGCAACTACAGCAGCAACAGCAGTTGCAGTCAATGAGGAATCTTGGTCCTGTGAAACTAGAACCACAACAACTTCAATCAATGAGAAACATGGGTCCTGTAAAATTGGAACCTCAACAGTCTGATCAATCATTGTTTCTACAGCAGCAACATCAACATCAACAGCAACAGCAACAGCAACAACAGCAGTTACTCAGTATGTCTAGGCAGTCCTCGCAGGCTGCTGCTGCACAGATTAATATTTTGCAACAACAAAGACTCTTGCAATTTCAACACCAACAGCAACTCCTGAAGGCTATACCTCAGCAAAGACCGCATTTGCCTCAACAATTTCAACAACAAAATTTACCATTGAGATCCCCTGTAAAATCTGTTTATGAACCTGGCATGTGTGCTCGGCGCTTAACGAATTATATGTGCCAACAGCAGCAAAGGCCTGAAGACAACAATATCGAGTTCTGGAGGAAATTTGTTGCAGATTACTTTGCTCCCCATGCCAAAAAGAAATGGTGCGTTTCAATGTATGGAAATGGTCGCCAAACAACTGGTGTATTTCCACAGGATGTTTGGCATTGTGAAATATGCAACCGCAAGCCTGGTCGAGGTTTTGAAGCGACTTTTGAAGTTCTTCCAAGGCTGTTCAAAATCAAGTATGAGAGTGGAACGCTCGAAGAGCTTCTCTATGTTGATATGCCCCGCGAATATCATAATTCATCTGGACAAATTGTCCTAGATTACGCAAAAGCAATACAAGAAAGCGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGCCAACTTCGGATAGTTTTTTCTCCCGACTTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTTATTCCTCGAAGGTTGCTAATACCTCAGGTTAGTCAGTTGGGTGCAGCTGCTCAGAAGTATCAGACTGCAATTCAAAATGCATCATCAAACTTGCCTACTCCAGAGTTGCAAAATAATTGCAACATGTTTGTGGGCTCAGCTAGACAATTGGCCAAGGCATTGGAAGTGCCATTAGTAAATGACTTGGGATATACGAAGAGATATGTCCGGTGCCTTCAGATATCAGAAGTAGTCAATAGTATGAAGGACTTGATAGACTACAGCCAAGAAACTACGACTGGGCCAATTGAGAGCTTAGCAAAGTTTCCGCGAAAGACAAATGCTTCACCTGGCTTCCACAGCCAAACTCAAATTACCGAGCAACAGTTACCTCAACCTCAGCAAACAAGTGATCAAAACGCAAACGGTGATCAAAGCTCTGCTCAGACTGCTCCGATGCAGCTTGCTGCTAACAATGGTGTTTCTGTTCCAAGTGCAAATAACTCTGGTAATCCAGCATCAACTTCATCTCCCGCCAGTACCATTGTTGGGTTACTCCACCAGAATTCCATGAACTCCAGACAGCAGAACTCTATCAGTAATGCTGGCAGCCCTTATGCTGGAAATTCTGCGCAAATGTCGTCTCCAGGTTCCTCAGCGATTGTTCAGGCACAAGCAAACTCCTCGTTCCAATCGCCTACATTGTCCTCACCTAACAATCATCCACAATCATCAATTGGCACTGCAACAACTACTAATCACATGAGTGCCGCTAATTCTCCGGCAAATGTTCCCTTGCAACAGCCAACACCTTCTTCCGAAGCCGATCAAAACGAGTCCCAGAGTTCCGTACAAAAGATTATTCAGGAATACATGATGTCAAATCATCTAAACGGGATGAACACAATGACTGGTGTATCCTCTATAGGAGATGATGTGAAAACTGTTAATGGAGTGTTACCAGGAAACAATGTTATGAGTCTCAATGGACGGAACGGCCTCATTGGAACAGGAACTGCTAATGGTGTTTCTGGTATGAGGAGTGCAGGATATGGTTCAATGGGTGGTGGTGGGGGACTCAGTCAGACTAATATGGTCAATGGAATGAAATCTGCAATGGGAAATAACTCGATTTCGAATGGGAGAATTGGGATGGCGTCATTGGCTCGAGAACAGAGCATAAATCATCAAGATTTGGGGGACCAGCTTCTTAATGGACTTGGAGCTGTGAATGGATTTAATAATCTTCCATTTGATTATTGA 2742 43.91 MVPSGPSTPIGGAQSVSPSLLRSNSGMMGAQGGLPSQSAFPSLVSPRTQFNSMNMLGNTPSMSSLLNQSFVNGVPNSGPSGLGNSQRVGMDAGSESDPFSLVGNGVNFNNTPSSLVTSNTANPGSSSQVSVHQFSNHSSGQILPNQQQSQQIEPQNFQHSQHSMQQFATSNNTQQSQQLQQQQQHQFQRGSLCSAGPVKLEPQMNNNDLQGQQLQQQQQLQSMRNLGPVKLEPQQLQSMRNMGPVKLEPQQSDQSLFLQQQHQHQQQQQQQQQQLLSMSRQSSQAAAAQINILQQQRLLQFQHQQQLLKAIPQQRPHLPQQFQQQNLPLRSPVKSVYEPGMCARRLTNYMCQQQQRPEDNNIEFWRKFVADYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLPTPELQNNCNMFVGSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSQETTTGPIESLAKFPRKTNASPGFHSQTQITEQQLPQPQQTSDQNANGDQSSAQTAPMQLAANNGVSVPSANNSGNPASTSSPASTIVGLLHQNSMNSRQQNSISNAGSPYAGNSAQMSSPGSSAIVQAQANSSFQSPTLSSPNNHPQSSIGTATTTNHMSAANSPANVPLQQPTPSSEADQNESQSSVQKIIQEYMMSNHLNGMNTMTGVSSIGDDVKTVNGVLPGNNVMSLNGRNGLIGTGTANGVSGMRSAGYGSMGGGGGLSQTNMVNGMKSAMGNNSISNGRIGMASLAREQSINHQDLGDQLLNGLGAVNGFNNLPFDY* 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19601789 19612004 - CsaV3_6G035610.1 Csa06g02175 533802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02175 913 MobiDBLite consensus disorder prediction 69 189 - -
Csa06g02175 913 Pfam LIM-domain binding protein 345 599 IPR029005 -
Csa06g02175 913 MobiDBLite consensus disorder prediction 1 41 - -
Csa06g02175 913 MobiDBLite consensus disorder prediction 8 41 - -
Csa06g02175 913 PANTHER LIM DOMAIN-BINDING PROTEIN 1 913 IPR029005 -
Csa06g02175 913 MobiDBLite consensus disorder prediction 246 276 - -
Csa06g02175 913 MobiDBLite consensus disorder prediction 608 672 - -
Csa06g02175 913 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 913 - -
Csa06g02175 913 MobiDBLite consensus disorder prediction 100 189 - -
Csa06g02175 913 MobiDBLite consensus disorder prediction 684 776 - -
Csa06g02175 913 MobiDBLite consensus disorder prediction 596 672 - -
Csa06g02175 913 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01685 Csa-Chr3:12638830 Csa06g02175 Csa-Chr6:19601789 6.52E-117 dispersed
Csa06g01917 Csa-Chr6:17297174 Csa06g02175 Csa-Chr6:19601789 0 dispersed
Csa06g02175 Csa-Chr6:19601789 Csa05g00586 Csa-Chr5:3864305 3.39E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02175 - - csv:101221714 1562.74