Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02195 ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCGGGAGGCCTGATAGAGGCCAACTTGCTCTTACCATGGCTTCTGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGCCGGCTAGCACAAAATCGTGAGGCTGCAAGGAAAAGCCGTTTGAGGAAAAAGGCATATGTTCAACAACTAGAAAGCAGTCGATTAAAGTTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAACAGGGAATTTTCATATCAAGCTCGGGTGACCAGACCCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCCCGATGGCTTGAAGATCACAATCGTCAACTGAACGAATTGAGATCAGCTGTTAACTCACATGCAAGTGACCCAGAATTGCGTATTGTTGTCGATGGCATCTTGGTTCATTATGATGAGCTCTTTAGACTCAAGGGAAATGCAGCAAAGGCTGACGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGTTTTCTTTGGCTTGGGGGTTTTTGTTCATCCGAGCTCTTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACGGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTGTCGAGTGGAGCTCTCGGTTCCTCTGGTTCGTCAGGGAATGTCGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTCGGGACCCTCGAGGGCTTTATACGCCAAGCTGACAATCTACGACAACAGACACTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCACTTCTTGCCATACATGACTACTTCTCCAGACTACGTGCTCTTAGTTCGCTCTGGCTTGCTCGTCCCAGAGAGTAA 1002 47.11 MATEGSPRTDISTDGDTDEKSGRPDRGQLALTMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFCSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGALGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19810153 19817529 + CsaV3_6G035810.1 Csa06g02195 533822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02195 333 ProSiteProfiles DOG1 domain profile. 113 330 IPR025422 GO:0006351|GO:0043565
Csa06g02195 333 PANTHER TRANSCRIPTION FACTOR TGA9 4 333 - -
Csa06g02195 333 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 4 333 - -
Csa06g02195 333 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351|GO:0043565
Csa06g02195 333 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700|GO:0006355
Csa06g02195 333 SMART brlzneu 44 107 IPR004827 GO:0003700|GO:0006355
Csa06g02195 333 Coils Coil 67 94 - -
Csa06g02195 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700|GO:0006355
Csa06g02195 333 MobiDBLite consensus disorder prediction 1 50 - -
Csa06g02195 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700|GO:0006355
Csa06g02195 333 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700|GO:0006355
Csa06g02195 333 MobiDBLite consensus disorder prediction 11 25 - -
Csa06g02195 333 Gene3D - 47 99 - -
Csa06g02195 333 Coils Coil 124 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02868 Csa-Chr5:29012510 Csa06g02195 Csa-Chr6:19810153 0 dispersed
Csa06g00336 Csa-Chr6:2598017 Csa06g02195 Csa-Chr6:19810153 1.19E-156 dispersed
Csa06g01300 Csa-Chr6:10879380 Csa06g02195 Csa-Chr6:19810153 2.03E-90 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32059 PF14144 DOG1 7.20E-30 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02195 K14431 - csv:101213210 603.208