Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02195 | ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCGGGAGGCCTGATAGAGGCCAACTTGCTCTTACCATGGCTTCTGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGCCGGCTAGCACAAAATCGTGAGGCTGCAAGGAAAAGCCGTTTGAGGAAAAAGGCATATGTTCAACAACTAGAAAGCAGTCGATTAAAGTTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAACAGGGAATTTTCATATCAAGCTCGGGTGACCAGACCCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCCCGATGGCTTGAAGATCACAATCGTCAACTGAACGAATTGAGATCAGCTGTTAACTCACATGCAAGTGACCCAGAATTGCGTATTGTTGTCGATGGCATCTTGGTTCATTATGATGAGCTCTTTAGACTCAAGGGAAATGCAGCAAAGGCTGACGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGTTTTCTTTGGCTTGGGGGTTTTTGTTCATCCGAGCTCTTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACGGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTGTCGAGTGGAGCTCTCGGTTCCTCTGGTTCGTCAGGGAATGTCGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTCGGGACCCTCGAGGGCTTTATACGCCAAGCTGACAATCTACGACAACAGACACTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCACTTCTTGCCATACATGACTACTTCTCCAGACTACGTGCTCTTAGTTCGCTCTGGCTTGCTCGTCCCAGAGAGTAA | 1002 | 47.11 | MATEGSPRTDISTDGDTDEKSGRPDRGQLALTMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFCSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGALGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE* | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 19810153 | 19817529 | + | CsaV3_6G035810.1 | Csa06g02195 | 533822 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02195 | 333 | ProSiteProfiles | DOG1 domain profile. | 113 | 330 | IPR025422 | GO:0006351|GO:0043565 | |
Csa06g02195 | 333 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 4 | 333 | - | - | |
Csa06g02195 | 333 | PANTHER | TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 | 4 | 333 | - | - | |
Csa06g02195 | 333 | Pfam | Seed dormancy control | 130 | 205 | IPR025422 | GO:0006351|GO:0043565 | |
Csa06g02195 | 333 | Pfam | bZIP transcription factor | 48 | 88 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g02195 | 333 | SMART | brlzneu | 44 | 107 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g02195 | 333 | Coils | Coil | 67 | 94 | - | - | |
Csa06g02195 | 333 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 46 | 90 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g02195 | 333 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Csa06g02195 | 333 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 51 | 66 | IPR004827 | GO:0003700|GO:0006355 | |
Csa06g02195 | 333 | SUPERFAMILY | Leucine zipper domain | 48 | 91 | IPR046347 | GO:0003700|GO:0006355 | |
Csa06g02195 | 333 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
Csa06g02195 | 333 | Gene3D | - | 47 | 99 | - | - | |
Csa06g02195 | 333 | Coils | Coil | 124 | 144 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g02868 | Csa-Chr5:29012510 | Csa06g02195 | Csa-Chr6:19810153 | 0 | dispersed | |
Csa06g00336 | Csa-Chr6:2598017 | Csa06g02195 | Csa-Chr6:19810153 | 1.19E-156 | dispersed | |
Csa06g01300 | Csa-Chr6:10879380 | Csa06g02195 | Csa-Chr6:19810153 | 2.03E-90 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32059 | PF14144 | DOG1 | 7.20E-30 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02195 | K14431 | - | csv:101213210 | 603.208 |