Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02206 ATGTCGGGATCTGAAACTGGTGTTATCACCAGTAGAGAACCTTTCGGCGTCGGCGTTCAAAATAGCTCCTTACACTCGCAATCGGGGACTCAGAATATGCGATTAGCCTTCGGCGCTGATGGGACAGGCTACAAGCCTGTAACTCCTTCGACCTCACCGTCTTACCAATCCTCCATGGCCGGAGTTTCTGGTAATGCCGGAATTGAGGGATCGGCTGGTGGTGGTGGTGGAGGAGGGTCTATGTTGCCTCATGGGTTCAACATAAATTCGGTGGGCAGTGAGCAAATAAAGAGGAAGAGGGGTAGGCCGAGGAAGTATGGACCGGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAACTGGATGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGCTTTGGGCTCACCAAATTCATCGAAGAAAACTAAAGGCAGGCCACTTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGGATTGGATTCACCCCACATGTTATTGATGTGAAGGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATCCTGTCTGCAAATGGATCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGGCGATTTCAAATTTTGTCTCTTTCGGGTTCATTTCTCCTGTCTGAAAATGGTGGTCAGAGGAGTAGAACTGGTGGGTTGAGTGTATCTTTGTCCGGTCCAGATGGTCGAGTTTTAGGTGGTAGTGTGGCGGGTCTTCTCACAGCTTTATCTCCTGTTCAGGTGGTGGTTGGAAGTTTCATAGCCGATGGCAACAAGGAACCAAAGCCAGCCCGACAAAATGAACTCACCACAGCCTTGCCAATGCTAAACACAGCCGGCTTCGGCCATTTGACAGGAGGAGCCAGTAGTCCATCCCATGGGACGCTAAGCGAGTCTTCCGATGGCAGCCCTGACAGTCCCCTGAACAACAGCTCTGGAGGCTGCAACAACAGCAACCATCCACAGGGCATGTCCGGTATGCCATGGAAGTAA 1095 49.5 MSGSETGVITSREPFGVGVQNSSLHSQSGTQNMRLAFGADGTGYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGTGCFPPSNMANSASEALGSPNSSKKTKGRPLGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGSISNVTLRQPATSGGTVTYEGRFQILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGSVAGLLTALSPVQVVVGSFIADGNKEPKPARQNELTTALPMLNTAGFGHLTGGASSPSHGTLSESSDGSPDSPLNNSSGGCNNSNHPQGMSGMPWK* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19888856 19893200 - CsaV3_6G035920.1 Csa06g02206 533833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02206 364 CDD DUF296 173 287 IPR005175 -
Csa06g02206 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 10 363 - -
Csa06g02206 364 MobiDBLite consensus disorder prediction 124 150 - -
Csa06g02206 364 MobiDBLite consensus disorder prediction 45 64 - -
Csa06g02206 364 Gene3D - 174 307 - -
Csa06g02206 364 ProSiteProfiles PPC domain profile profile. 168 309 IPR005175 -
Csa06g02206 364 MobiDBLite consensus disorder prediction 314 364 - -
Csa06g02206 364 MobiDBLite consensus disorder prediction 40 158 - -
Csa06g02206 364 MobiDBLite consensus disorder prediction 1 27 - -
Csa06g02206 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 287 IPR005175 -
Csa06g02206 364 MobiDBLite consensus disorder prediction 317 358 - -
Csa06g02206 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 363 IPR039605 GO:0003680
Csa06g02206 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 172 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00279 Csa-Chr2:1909716 Csa06g02206 Csa-Chr6:19888856 6.78E-48 dispersed
Csa03g04617 Csa-Chr3:40112092 Csa06g02206 Csa-Chr6:19888856 3.43E-60 dispersed
Csa04g02738 Csa-Chr4:26296064 Csa06g02206 Csa-Chr6:19888856 3.66E-119 dispersed
Csa05g00288 Csa-Chr5:1809144 Csa06g02206 Csa-Chr6:19888856 2.35E-58 dispersed
Csa05g01080 Csa-Chr5:10953266 Csa06g02206 Csa-Chr6:19888856 1.56E-62 dispersed
Csa06g00046 Csa-Chr6:313734 Csa06g02206 Csa-Chr6:19888856 4.74E-69 dispersed
Csa06g02206 Csa-Chr6:19888856 Csa03g00180 Csa-Chr3:1332208 2.46E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02206 - - csv:101211767 686.026