Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02220 ATGTCATCAACAAGTAGACCAAGCCAAGCTTCCAGGAACACCGCAGGAGGATCCTCTTCTTCCTCACAATCAAGACACAGCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTTCTTCCTTCGACTACTCCACGTCAATCCATCTCACCAACAACCCAACTGCCGCACCGCCTGCCACCACCACCACAGCATACCTTCAACAAATCCAAATATCCAACCTCATCCAACCCTTTGGCTGCCTCTTAGCCCTCCACCCCACCACCCTCAAACTCATTGCCTTCAGCCAAAATGCTCCCGAAATGCTCACCACCGTCGCTCACACCGTCCCTGACGGCGACAACCACCCCCTCCTCGCCATTGGCACCGACCTCCGAGGCATCTTCACCGCCCCCACTGCCACCGCCCTCCTCAAGGCCCTTGCCTTCCCCGACGTCACCCTCCTCAACCCTATTCTCGTCCACTCCAAGTCCTCAGGGAAGCCCTTTTACGCCATTCTCCATCGCGTCACCGGTAGCCTTATCATCGACTTTGAACCTCTCAAACCCGACCAAGTCCCCGTCACTGCTGCAGGAGCTCTTCAATCCTATAAGCTCGCGGCCAAAGCCATCACTCGTCTCCAGGCTCTCCCCAGTGGGAGCCTGGTTAGACTGTGTGACACTATGGTTCAAGAAGTGTTTGAGTTGACGGGTTACGATAGAGTGATGGCTTATAAGTTTCATGATGATGATCATGGAGAGGTTTTTTCCGAGGTTACAAAGCCTGGCCTCGAACCTTATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCAAGATTTTTGTTCATGAAGAACAAGGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAGGTCATTCAAGATCAAAATCTTGATTTTGATTTGACTTTGTGTGGCTCAACTTTAAGAGCTCCTCATTGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCATTGGTTATGGCCATTGTGGTAAATGAAGAAGAAGAAGAAGAGAATTTTGATCAAAGCAACAACAATGATGCTTCTTTGCAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCACAACACAACTCCTAGATTTGTCCCTTTCCCTCTTAGATATGCTTGTGAATTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACACAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGGATTGTGTCAAGAACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTTCATCTTCAAGATATTGCTTCGTGGATTTTGGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCCGGCGCGCTTGCACTTGGCGACGTGGTGTGTGGGATGGCTGCTGTGAGAATATCTTCCAACGACATGATTTTCTGGTTTCGATCGCACACTGCATCGGAGATTCGGTGGGGTGGGGCGAAGCATGAGCCGGGTGAGAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCCTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCATGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATACTAAGAAATACTTTTAAAGATAGAGATGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACACTCAGTGATCTTAAGATTCTTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTTGATGGGCTTGTGAATGGTTGGAACTCAAAAATTGCTGAATTGACTGGACTTTCGGTTGACAAAGCCATTGGCAAGAATTTGCTCACATTAGTGAAAGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGGTCTTGGCATTGCAAGGTCAAGAGGAAAAAAACGTTCAATTCGAGATAAAAACACACAACGTGGACATCAATTCGGGCTCGATAAGCCTAATAGTAAATGCTTGTGCAAGCAAAGACTTAAGTGAAAATGTGGTGGGAGTATGCTTTGTAGCACAAGACATAACATGTCAAAAGATAGTAATGGACAAATTCACAAAACTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTGGATGAATTTGGTTGGTGCACAGAATGGAACTTAGCAATGACAAAACTAAGTGGATGGTCTCGTGAATCAGTTGTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAACACAATTAAACAACTCGTCATCATGTTGTTGCCAACTCAAGAATCAAGAAGCATTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAGTGGACAAGATCCTGAAAAGAATATTTCATTTGGTTTTTATGGAAGAAATGGGATGTTTGTGGAATGTCTATTATGTGTCAATAAGATATTGGATAGAGATGGTGCAGTTATTGGGGTTTTTTGTTTCTTGCAACTTGCAAGTCAAGAATTGCAACAAGCTTTGAGTATTCAAAAATTGTGTGAGAGAACTGCTTCAAATAGGTTGAAGGCATTGGGATATATGAAGAGGCAGATTCAAAATCCACTGTGCGGGATTATTTTTTCAAGGAAAATGTTGCAACAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGATCAATAGTGTTAATTGTCAAAGGCAAATCTCCAAGGTTCTTGACGAGTCTCATGATCTTGATCATATTATTCAAGGAGTGATTGAATTAGAAATGGTTGAGTTTTCATTATATGAAGTATTGGTAGTAGCAATAAGTCAAGTGATGATGAAGAGCAAAGGAAAAGGCATTCAAATAGAAAATGAAGTTGGAGAAGAGATAATGTGTGAGACATTATATGGAGACAATTTGAGAGTTCAGCAAATAATGGCTGATTTCTTGTTGATATCAGTTCATTATGCACCAACAGGTGGCCAACTTATGCTTTCAACAACTTTTACTAATAAGGATCATTTTAGGAACTCACTACATCTTCTTCATCTTGAATTCAGGATAACATATGTTGGAGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGAAATGATAATATGGATCATGAGGATTCATCTGAAGAAGGTTATAGCCTGTTCATAAGTAGAAAACTTGTGAAGATGATGAATGGAGATGTGAGATATGTGAGAGAAGCTGCCAAATCAACCTTCATTATAACTCTCCAACTTGCTGCTGCTGCTCATAAGTAA 3447 41.54 MSSTSRPSQASRNTAGGSSSSSQSRHSSRILTQTSIDAKLQSHFEQSGSSFDYSTSIHLTNNPTAAPPATTTTAYLQQIQISNLIQPFGCLLALHPTTLKLIAFSQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRGIFTAPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAILHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLVRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDQNLDFDLTLCGSTLRAPHCCHLQYMENMDSIASLVMAIVVNEEEEEENFDQSNNNDASLQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWILEYHMDSTGLSTDSLYDAGYPGALALGDVVCGMAAVRISSNDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDRDDHMSEIHRKSIQTTLSDLKILDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVDKAIGKNLLTLVKDSSVEIVKKMLVLALQGQEEKNVQFEIKTHNVDINSGSISLIVNACASKDLSENVVGVCFVAQDITCQKIVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCTEWNLAMTKLSGWSRESVVNKMLLGEVFGTQLNNSSSCCCQLKNQEAFVNLGIVLNNAMSGQDPEKNISFGFYGRNGMFVECLLCVNKILDRDGAVIGVFCFLQLASQELQQALSIQKLCERTASNRLKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEVGEEIMCETLYGDNLRVQQIMADFLLISVHYAPTGGQLMLSTTFTNKDHFRNSLHLLHLEFRITYVGGGIPESLLNEMFGNDNMDHEDSSEEGYSLFISRKLVKMMNGDVRYVREAAKSTFIITLQLAAAAHK* 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20015890 20021182 - CsaV3_6G036060.1 Csa06g02220 533847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02220 1148 Pfam PAS fold 634 748 IPR013767 GO:0006355
Csa06g02220 1148 Pfam PAS fold 764 892 IPR013767 GO:0006355
Csa06g02220 1148 Gene3D PAS domain 78 326 - -
Csa06g02220 1148 PIRSF Phytochrome_conventional 7 1148 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Csa06g02220 1148 PRINTS Phytochrome signature 138 160 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 PRINTS Phytochrome signature 238 257 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 PRINTS Phytochrome signature 323 344 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 PRINTS Phytochrome signature 442 462 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 PRINTS Phytochrome signature 527 546 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 PRINTS Phytochrome signature 560 578 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 PRINTS Phytochrome signature 634 650 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 PRINTS Phytochrome signature 653 668 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 PRINTS Phytochrome signature 726 743 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 PRINTS Phytochrome signature 746 766 IPR001294 GO:0006355|GO:0009584
Csa06g02220 1148 SMART gaf_1 223 422 IPR003018 GO:0005515
Csa06g02220 1148 SUPERFAMILY GAF domain-like 420 599 - -
Csa06g02220 1148 SUPERFAMILY GAF domain-like 203 409 - -
Csa06g02220 1148 PANTHER PHYTOCHROME A 11 1146 - -
Csa06g02220 1148 SUPERFAMILY PYP-like sensor domain (PAS domain) 637 744 IPR035965 -
Csa06g02220 1148 Coils Coil 409 429 - -
Csa06g02220 1148 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Csa06g02220 1148 Gene3D - 417 590 IPR043150 -
Csa06g02220 1148 Gene3D PAS domain 777 899 - -
Csa06g02220 1148 PANTHER TWO-COMPONENT HISTIDINE KINASE 11 1146 - -
Csa06g02220 1148 Pfam PAS fold 74 189 IPR013654 GO:0006355
Csa06g02220 1148 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 193 IPR035965 -
Csa06g02220 1148 Gene3D PAS domain 627 762 - -
Csa06g02220 1148 ProSiteProfiles PAS repeat profile. 764 816 IPR000014 -
Csa06g02220 1148 TIGRFAM sensory_box: PAS domain S-box protein 638 751 IPR000014 -
Csa06g02220 1148 Gene3D - 958 1138 IPR036890 -
Csa06g02220 1148 SUPERFAMILY PYP-like sensor domain (PAS domain) 778 889 IPR035965 -
Csa06g02220 1148 Pfam GAF domain 224 412 IPR003018 GO:0005515
Csa06g02220 1148 CDD PAS 642 748 IPR000014 -
Csa06g02220 1148 SMART pas_2 763 835 IPR000014 -
Csa06g02220 1148 SMART pas_2 633 699 IPR000014 -
Csa06g02220 1148 CDD PAS 775 892 IPR000014 -
Csa06g02220 1148 ProSiteProfiles Histidine kinase domain profile. 921 1144 IPR005467 -
Csa06g02220 1148 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1140 IPR036890 -
Csa06g02220 1148 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 402 IPR016132 -
Csa06g02220 1148 SMART HKATPase_4 1027 1144 IPR003594 -
Csa06g02220 1148 ProSiteProfiles PAS repeat profile. 631 701 IPR000014 -
Csa06g02220 1148 Gene3D - 77 573 IPR029016 -
Csa06g02220 1148 Pfam Phytochrome region 425 600 IPR013515 GO:0006355|GO:0009584
Csa06g02220 1148 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1027 1142 IPR003594 -
Csa06g02220 1148 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02220 Csa-Chr6:20015890 Csa07g00253 Csa-Chr7:1981713 0 dispersed
Csa06g02220 Csa-Chr6:20015890 Csa06g02224 Csa-Chr6:20046075 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02220 K12120 - csv:101219585 2226.44