Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02222 ATGGAGGGTGGAGAGTTGAGGATGGATTCTCCGAGAAAACCTCACAAGGATGTGACCAATTTGCTTCCATCTCTCGAGCAGAGACTACCTCATGGTCATGGCGTTTCCAAGAAGCGCCGTGATTCAGACCAAGATTCGCCTAAAGTCAGTTCCACCAGTAATGGCAACAATGCCAATGCCAATAGCAGCGCTGGGAATGATTCTGGTGGAAAGCGCGTTAAAACAGCGGCGTGTAGAGATGATAATCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGACCGAACAGAACTCCCAGCCTACTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTCTGGCCGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGATTTGGTCCCTGGGTGCAATAAGGTGATTGGAAAAGCGCTTGTACTTGATGAGATAATAAATTACATTCAATCTCTTCAGCGTCAGGTTGAGTTTTTGTCGATGAAACTGGAAGCAGTTAATTCCCGAATTGGCCCTGGCATTGAAGTGTTTCCTCCAAAAGATTATGGTCAACAAACATTCGATACAACCGGCGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCAGAATGGTTGCATATGCAGATTGGTGGTGGTTTCGAAAGAACGACGTAG 726 46.42 MEGGELRMDSPRKPHKDVTNLLPSLEQRLPHGHGVSKKRRDSDQDSPKVSSTSNGNNANANSSAGNDSGGKRVKTAACRDDNHESKTEAEPRSGKTEQNSQPTPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20032486 20036831 - CsaV3_6G036080.1 Csa06g02222 533849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02222 241 PANTHER BNAC05G07950D PROTEIN 23 241 - -
Csa06g02222 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 170 IPR011598 GO:0046983
Csa06g02222 241 MobiDBLite consensus disorder prediction 1 16 - -
Csa06g02222 241 Pfam Helix-loop-helix DNA-binding domain 124 171 IPR011598 GO:0046983
Csa06g02222 241 Gene3D - 117 189 IPR036638 GO:0046983
Csa06g02222 241 Coils Coil 167 187 - -
Csa06g02222 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 188 IPR036638 GO:0046983
Csa06g02222 241 MobiDBLite consensus disorder prediction 73 93 - -
Csa06g02222 241 CDD bHLH_AtBPE_like 110 195 - -
Csa06g02222 241 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 23 241 IPR024097 GO:0006355
Csa06g02222 241 SMART finulus 126 176 IPR011598 GO:0046983
Csa06g02222 241 MobiDBLite consensus disorder prediction 1 108 - -
Csa06g02222 241 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00196 Csa-Chr1:1286661 Csa06g02222 Csa-Chr6:20032486 1.33E-32 dispersed
Csa03g02075 Csa-Chr3:16961726 Csa06g02222 Csa-Chr6:20032486 6.39E-35 dispersed
Csa06g02222 Csa-Chr6:20032486 Csa07g01563 Csa-Chr7:16047841 4.99E-45 dispersed
Csa06g02222 Csa-Chr6:20032486 Csa07g00008 Csa-Chr7:185656 3.26E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32061 PF00010 HLH 1.80E-08 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02222 - - csv:101209222 422.935