Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02231 ATGGCTGTCTTTAGTTCCTTGTTTGTGTGTTCGTTGCTGTTTTTTGTGGTAGCAAATGCCAATGTAGATGAAGATGAATACTGGCAAACGCGTGCCACTGAAGCTAAGAAAGTTGCACAAGGTGCCTTCAATGCTAACCCTGAAATTGTTACCGATACCTTGAACGCTGCTGTTAGTCGAACGATGTTGGGTCACAATAGTACGAGAAGGAGCCTAAGGAAGAAGTATAGAGGACCATGCTTGGCAACGAACCCCATTGATAGATGTTGGAGATGCGATCGAAATTGGGCTAAAAACCGACGGAAGCTAGCGGAATGTCCATTGGGGTTCGGCCACCAAACCATTGGCGGAAAGAGAGGACCAATCTACGTGGTGACAGACGCGTCTGACGATGACTTGGTTAATCCTAAACCTGGAACCCTACGACATGGTGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGAGAAGCATGGTCATTAGGCTGAGTCAAGAGCTAATGATCTCAAGCCACAAGACCATTGACGCTCGGGGGGCTAACGTCCACATTGCCTTTGGCGCTGGTCTCACCATTCAATTCGTCAACAATGTAATCATTCATAACCTTCACATCCATGACATCGTATCTAAATCGGGTGGAATGATTAGAGATTCAGTGGATCATTATGGGTTCAGAACACAGAGCGATGGCGATGGCATCTCCATCTTTGGTTCTTCTCATGTTTGGATCGACCACGTTTCCATGTCCAATTGTCAAGATGGTCTTATTGACGCCATCATGGGTTCCACAGCAATCACTATCTCCAATTGTCATTTCACTCACCACAACGAGGTGATGTTATTTGGAGCGAGCGATAGCTACGCAGAAGACGAAATTATGCAAGTAACCCTAGCATTCAACCACTTTGGGAGAGGATTGGTGCAAAGGATGCCAAGGTGTAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACTCATTGGCTTATGTACGCGATCGGCGGTAGCCAACATCCTACCATTGTTAGCCAAGGCAATCGTTTCATCGCTCCTCCAAACCCCAATGCCAAACAGATAACAAAGAGAGAATATGCAATGGAAGATGAATGGAAGCATTGGTCATGGAGATCAGAAGGAGATGAGTTGATGAATGGAGCAGTGTTTATTGCATCAGGTGACCAAACAAAAGGGAAGAAGAAAGGTTTATCAAGATATGATATGATTTCCTTCAAGCCAGGAACCTACGTCAGAAGACTTGTACGCCTTTCTGGCACAATTGAATGCACCCCAGGCAAACCATGCTAG 1308 45.64 MAVFSSLFVCSLLFFVVANANVDEDEYWQTRATEAKKVAQGAFNANPEIVTDTLNAAVSRTMLGHNSTRRSLRKKYRGPCLATNPIDRCWRCDRNWAKNRRKLAECPLGFGHQTIGGKRGPIYVVTDASDDDLVNPKPGTLRHGVIQKGPLWIIFGRSMVIRLSQELMISSHKTIDARGANVHIAFGAGLTIQFVNNVIIHNLHIHDIVSKSGGMIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHVSMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAEDEIMQVTLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQITKREYAMEDEWKHWSWRSEGDELMNGAVFIASGDQTKGKKKGLSRYDMISFKPGTYVRRLVRLSGTIECTPGKPC* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20103120 20105417 - CsaV3_6G036170.1 Csa06g02231 533858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02231 435 SUPERFAMILY Pectin lyase-like 71 396 IPR011050 -
Csa06g02231 435 Gene3D - 83 428 IPR012334 -
Csa06g02231 435 Pfam Pectate lyase, N terminus 25 72 IPR007524 GO:0030570
Csa06g02231 435 PANTHER PECTATE LYASE 18-RELATED 6 435 IPR045032 GO:0030570
Csa06g02231 435 Pfam Pectate lyase 168 349 IPR002022 -
Csa06g02231 435 PANTHER PECTATE LYASE 6 435 - -
Csa06g02231 435 SMART amb_all 158 355 IPR002022 -
Csa06g02231 435 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Csa06g02231 435 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Csa06g02231 435 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Csa06g02231 435 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Csa06g02231 435 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Csa06g02231 435 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Csa06g02231 435 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Csa06g02231 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00790 Csa-Chr1:5004584 Csa06g02231 Csa-Chr6:20103120 0 dispersed
Csa03g03864 Csa-Chr3:34017655 Csa06g02231 Csa-Chr6:20103120 0 dispersed
Csa06g02231 Csa-Chr6:20103120 Csa02g00989 Csa-Chr2:9495612 3.81E-168 dispersed
Csa05g02422 Csa-Chr5:26233901 Csa06g02231 Csa-Chr6:20103120 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02231 K01728 - csv:101217922 897.886