Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02243 ATGCTCCGTCTTCAATGTCTCTCTTCTTCATTTCTTCCCACATTCAACCCCGAACTCTCCCCGGAAACCTTATCCAACCCCAGACTTTGTACTCTCAACTTCTCTCGCCCACTCCCCACTCTCACTACTACACGCAAACCTACTTCAAAATGCCAATACTCCTGGAACACGCAGCAGCACCAACAATCGGCCTTCGAACCGGCCCCTCACACCGATTCCCTTTCCCCACAGTCTCGCGCCGGAGCTGCTGCTGCTGCTGCTGCATTGCCTCCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAGGGAAGGATTGGTTATGCTTCAATTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGTAGAAAACAGGTATTCTCATTATCCGTGACAGAATTGGGAAGTCTAATTGCCCTTGGCCCACGTGAGGCTTGTGAATTTTTTCACGACCCCTATAAGGGGAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGTCATTTCTTCAATCTCACCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATGACGAAGCCTGAAGATAGCAGCCGAGGAAATACCGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 831 47.89 MLRLQCLSSSFLPTFNPELSPETLSNPRLCTLNFSRPLPTLTTTRKPTSKCQYSWNTQQHQQSAFEPAPHTDSLSPQSRAGAAAAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMTKPEDSSRGNTANPRYGGDFEWNR* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20165050 20170872 + CsaV3_6G036290.1 Csa06g02243 533870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02243 276 Pfam Whirly transcription factor 99 233 IPR013742 GO:0003697|GO:0006355|GO:0006952
Csa06g02243 276 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 44 276 - -
Csa06g02243 276 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 44 276 IPR013742 GO:0003697|GO:0006355|GO:0006952
Csa06g02243 276 Gene3D Transcriptional Coactivator Pc4; Chain A 83 257 IPR009044 GO:0003677|GO:0006355
Csa06g02243 276 SUPERFAMILY ssDNA-binding transcriptional regulator domain 91 276 IPR009044 GO:0003677|GO:0006355
Csa06g02243 276 MobiDBLite consensus disorder prediction 253 276 - -
Csa06g02243 276 MobiDBLite consensus disorder prediction 60 78 - -
Csa06g02243 276 MobiDBLite consensus disorder prediction 60 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02243 - - - csv:101203474 550.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03126 Csa-Chr5:31196035 Csa06g02243 Csa-Chr6:20165050 1.82E-55 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02243 . 46 277 Whirly Transcription Factor Family AT1G14410 67.7 1.7e-90 329.3
Csa05g03126 . 57 242 Whirly Transcription Factor Family AT1G71260 58.0 1.6e-58 223.0
Csa06g02243 . 46 277 Whirly Transcription Factor Family AT2G02740 66.5 1.1e-87 320.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32063 PF08536 Whirly 3.70E-60 CL0609 Csa TF