Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02243 ATGCTCCGTCTTCAATGTCTCTCTTCTTCATTTCTTCCCACATTCAACCCCGAACTCTCCCCGGAAACCTTATCCAACCCCAGACTTTGTACTCTCAACTTCTCTCGCCCACTCCCCACTCTCACTACTACACGCAAACCTACTTCAAAATGCCAATACTCCTGGAACACGCAGCAGCACCAACAATCGGCCTTCGAACCGGCCCCTCACACCGATTCCCTTTCCCCACAGTCTCGCGCCGGAGCTGCTGCTGCTGCTGCTGCATTGCCTCCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAGGGAAGGATTGGTTATGCTTCAATTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGTAGAAAACAGGTATTCTCATTATCCGTGACAGAATTGGGAAGTCTAATTGCCCTTGGCCCACGTGAGGCTTGTGAATTTTTTCACGACCCCTATAAGGGGAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGTCATTTCTTCAATCTCACCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATGACGAAGCCTGAAGATAGCAGCCGAGGAAATACCGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 831 47.89 MLRLQCLSSSFLPTFNPELSPETLSNPRLCTLNFSRPLPTLTTTRKPTSKCQYSWNTQQHQQSAFEPAPHTDSLSPQSRAGAAAAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMTKPEDSSRGNTANPRYGGDFEWNR* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20165050 20170872 + CsaV3_6G036290.1 Csa06g02243 533870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02243 276 Pfam Whirly transcription factor 99 233 IPR013742 GO:0003697|GO:0006355|GO:0006952
Csa06g02243 276 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 44 276 - -
Csa06g02243 276 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 44 276 IPR013742 GO:0003697|GO:0006355|GO:0006952
Csa06g02243 276 Gene3D Transcriptional Coactivator Pc4; Chain A 83 257 IPR009044 GO:0003677|GO:0006355
Csa06g02243 276 SUPERFAMILY ssDNA-binding transcriptional regulator domain 91 276 IPR009044 GO:0003677|GO:0006355
Csa06g02243 276 MobiDBLite consensus disorder prediction 253 276 - -
Csa06g02243 276 MobiDBLite consensus disorder prediction 60 78 - -
Csa06g02243 276 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03126 Csa-Chr5:31196035 Csa06g02243 Csa-Chr6:20165050 1.82E-55 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32063 PF08536 Whirly 3.70E-60 CL0609 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02243 - - csv:101203474 550.436