Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02254 ATGGCGAAGGACTACCAGGATCCGCCACCGGTGCCGCTGATAGACGGCGTGGAGATTAGGAAATGGTCTTTCTATAGAGCTCTGATTGCGGAGTTCATGGCGACTCTGCTTTTCCTGTATGTGACGGTGTTGACGGTGATCGGGTACAAAGCGGAAACGCATGGTATGGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGAATTCTGGGAATTGCTTGGGCTTTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCAGTGACATTTGGGCTTCTGTTGGGGCGAAAGGTGTCACTTGTGCGGGCCGTGATGTACATGGTGGCCCAATGTTTGGGGGCGATCAGTGGAGTTGGGATTGTCAAGGCGTTCCAGAAGGCCCACTTCGAGAAGCACGGCGGCGGGGCTAATGGGGTTTCCGATGAGTACAGCATCGGCACTGGACTGGCGGCGGAGATTGTTGGGAGTTTTGTGTTGGTGTACACCGTCTTCTCCGCCACCGACCCTAAACGAAACGCCAGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGATTTGCAGTTTTCATGGTTCATTTGGCTACAATTCCAATCACAGGCACTGGAATCAACCCGGCTAGAAGCTTGGGATCTGCCGTTATTTTAAATGACCAAAAGACTTGGAATAACCATTGGGTATTTTGGGTTGGACCATTTCTTGGAGCAGCCATTGCAGCTTTCTACCATCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAGCTCACATGTGTGA 831 50.18 MAKDYQDPPPVPLIDGVEIRKWSFYRALIAEFMATLLFLYVTVLTVIGYKAETHGMGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLGRKVSLVRAVMYMVAQCLGAISGVGIVKAFQKAHFEKHGGGANGVSDEYSIGTGLAAEIVGSFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVILNDQKTWNNHWVFWVGPFLGAAIAAFYHQFILRAGAVKALGSFRSSSHV* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20243217 20246416 - CsaV3_6G036400.1 Csa06g02254 533881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02254 276 Gene3D Glycerol uptake facilitator protein. 11 276 IPR023271 -
Csa06g02254 276 PANTHER AQUAPORIN PIP2-4-RELATED 2 273 - -
Csa06g02254 276 Pfam Major intrinsic protein 18 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02254 276 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Csa06g02254 276 SUPERFAMILY Aquaporin-like 18 260 IPR023271 -
Csa06g02254 276 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 273 IPR034294 -
Csa06g02254 276 TIGRFAM MIP: MIP family channel proteins 30 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02254 276 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02254 276 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02254 276 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02254 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02254 276 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02254 276 PRINTS Major intrinsic protein family signature 238 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g02254 276 CDD MIP 26 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02254 Csa-Chr6:20243217 Csa06g02568 Csa-Chr6:22701550 8.14E-161 dispersed
Csa05g02810 Csa-Chr5:28635798 Csa06g02254 Csa-Chr6:20243217 4.86E-158 wgd
Csa06g02254 Csa-Chr6:20243217 Csa06g02564 Csa-Chr6:22678455 1.42E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02254 K09872 - csv:101205700 552.747