Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02262 ATGGATTCAGTGATTGATCCAATGATGAACCATGACAAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTACTATTAACTCAAAGGTAGTTTATTTCCCTCAGGGCCACACTGAGCATGCCCAGGGAAATGTCGATTTTGGGAATGCTCGAATTCCTTCAATCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCCAAGATAAAGTTGAGTCCACTGGCGAACAACGAATTCAATTTGGATAATGAGGATGATTTACTAATTCACAATGAACTTAAGAGTCAGGATAAACCTACCTCGTTTGCAAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGGTTCTCTGTGCCTCGTTATTGCGCTGAGACAATCTTTCCTCGGTTGGATTACTCGGTAGAGCCTCCTGTTCAGACTATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACACCACGTCGTCATCTTTTGACGACTGGGTGGAGTAGTTTTGTAAATCAGAAGAAACTTGTTGCTGGGGACTCGATTGTTTTCTTGAGGGCAGAAACTGGCGATCTGTGTATTGGAGTTAGACGAGCCAAGAGGGGAATTGGTTGTGGAATTGATTACTCACCTGGCTGGAACCCAACTAATTCAGGCTCTTCACTTGTGGGGTATTCAGATTATATGAGGGAGAGTGAAGGTAGATTGGGGAGAAGAAACTCAAATGGGAATCTGAGCGGGAGAGTGAAGGTCGAATCTGTCATTGAAGCTGCAATGCTTGCGGCCAGTGGCCAGTCCTTTGAGATTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTAAGGCCTCTAGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGCCTTTTGAAACTGAGGATTCATCTCGAATAAGCTGGTTCATGGGAACTGTATCTTCTATCCAGGCAGCTGATCCTATACGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCAGATTTGCTGCAAAATGTAAAGAGTGTCAACCCGTGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATCCATGTCTCCCCCTTCTCGCCACCGAGAAAGAAGCCACGTTTTCCACTTCAAGCAGATAGTTCTGGTTTTGGTCACCTTCCAATGCCATCGTTTTCCACCAATATCTTTGACACAACCAACCCCTTACAAGGTATTACCGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAATCAGCAAACTGCTTCCGGGACAATTTTCCCCTGGTCTTAAGCACCTTGATGATGCCACTCCTCTTCCTGGCATCCGAGGCGAAGATATTTTTGCAGGCATGAAAAACCCTGATAATTGTTCTCTCTGGCTACCAATGAGAAATCATATCCAAAGCTCGAAAGAAAGCTCAAAGGAAAGCTCAAAGGAAAGCTCGAAGGAGAGCAAAGAAACAAAACCAGCTCATATAATATTGTTTGGCCAACTTATTTTTCCTAACCAACAGAATTCTAACAGCTGCTCTGGAGATACGATGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCGCAGCAAAATGGTTCACTTGAGAATTCATCAGAGGGAGGATCTACCTTGTATAATGGTCGTATGAAGAATTATATAGAAAATTAG 1818 43.84 MDSVIDPMMNHDKHLDSQLWHACAGGLIQLPTINSKVVYFPQGHTEHAQGNVDFGNARIPSIIPCRVSGIRHMADPETDEVFAKIKLSPLANNEFNLDNEDDLLIHNELKSQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAETGDLCIGVRRAKRGIGCGIDYSPGWNPTNSGSSLVGYSDYMRESEGRLGRRNSNGNLSGRVKVESVIEAAMLAASGQSFEIVYYPCAGTPEFVVKASSLRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTVSSIQAADPIRWPDSPWRMLQVTWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFSPPRKKPRFPLQADSSGFGHLPMPSFSTNIFDTTNPLQGITANKIPAGIQGARHTQFGLSSPNLQISKLLPGQFSPGLKHLDDATPLPGIRGEDIFAGMKNPDNCSLWLPMRNHIQSSKESSKESSKESSKESKETKPAHIILFGQLIFPNQQNSNSCSGDTMNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTLYNGRMKNYIEN* 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20280542 20284716 - CsaV3_6G036480.1 Csa06g02262 533889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02262 605 MobiDBLite consensus disorder prediction 547 605 - -
Csa06g02262 605 CDD B3_DNA 117 218 IPR003340 GO:0003677
Csa06g02262 605 MobiDBLite consensus disorder prediction 510 531 - -
Csa06g02262 605 Gene3D - 116 220 IPR015300 -
Csa06g02262 605 Gene3D - 316 387 - -
Csa06g02262 605 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa06g02262 605 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Csa06g02262 605 MobiDBLite consensus disorder prediction 547 599 - -
Csa06g02262 605 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Csa06g02262 605 MobiDBLite consensus disorder prediction 511 531 - -
Csa06g02262 605 SUPERFAMILY DNA-binding pseudobarrel domain 107 220 IPR015300 -
Csa06g02262 605 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 585 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa06g02262 605 SMART B3_2 118 220 IPR003340 GO:0003677
Csa06g02262 605 PANTHER AUXIN RESPONSE FACTOR 16 9 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01198 Csa-Chr6:10156022 Csa06g02262 Csa-Chr6:20280542 0 dispersed
Csa06g02262 Csa-Chr6:20280542 Csa01g00009 Csa-Chr1:68012 9.22E-78 dispersed
Csa01g01699 Csa-Chr1:13379652 Csa06g02262 Csa-Chr6:20280542 2.04E-106 transposed
Csa06g02262 Csa-Chr6:20280542 Csa06g02577 Csa-Chr6:22760384 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32066 PF02362 B3 1.10E-20 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02262 - - csv:101204568 1163.67