Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02269 ATGGAACCCCGTCCAGAAAATGGCCACCATGGATGGGAGAAGGAGCCCTCTTTGTGTGCTGGTGTGGCCGCGTACTGGAGTGGTGCGGCGAAAGGGCTGGAGGGGAGTCATTTGGAGGAGTTTAAGCGTATGGTGATGGAGTTTCGTCGTTCTGTTGTGCGACTTGGAGGCGAGAGTCTTACGATAGCGCAAGTTGCTGCCATTGCTGCTCGTAGCTCTGACGTTGTGGTGGAGCTTTCTGAGGAGGCTCGTTCTGCTGTGGAGGCGAGTAGTAGGTGGGTCGTTGAAAGTATGACTAATGGAACTGATAGCTATGGAGTTACAACTGGTTTTGGTTCTACGTCTCATCGGAGGACTGACCAAGGAGAAGCCCTTCAAAAAGAACTCATTAGGTTCTTGAATGCTGGAATTTTTGGAAAAGATTCAAATTCTTGTCATACATTGTCTCAACAAGCCACAAGAGCTGCCATGGTAGTGAGAATCAACACACTTTTGCAAGGCTATTCTGGCATTAGGTTTGAAATTTTGGAAGCGATAGCCAAATTACTCAATCACAACATAACTCCATGCCTCCCTCTTAGAGGCACCATCACAGCTTCTGGTGATTTAGTTCCTCTTTCATACATTGCTGGACTTTTGACTGGTAGGCCTAATTCTAAGGCTATTGGGCCAAATGGTGAATCTCTTAATTCAAATGAGGCATTTCATCTTGCTGGGATTACTAGTGGTTTCTTCAATTTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCAGTTGGGTCAGGCTTAGCTTCTATGGTCCTATTTGAAGCTAACTTTCTTGCAATACTTTCGGAGATATTGTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAACCTGAGTTTACAGATCATTTAACCCATAAATTAAAGCATCATCCTGGCCAAATTGAAGCAGCTGCTATTATGGAGCATATATTATATGGAAGTTCTTACGTCAAAACTACTAAAAAGTTGCACGAGATTGACTCGCTTCAAAAGCCTAAACAAGATCGATATGCTCTTAGAACTTCTCCCCAATGGCTCGGTCCTCAAATTGAAGTCATTAGATACTCCACCAAAATGATTGAACGTGAGATTAACTCAGTGAATGATAACCCGTTGATTGATGTATCGAGAAACAAGGCTTTGCATGGAGGGAATTTTCAAGGCACTCCCATTGGTGTCTCTATGGATAATACTCGTTTAGCGATTGCTTCTATTGGTAAACTCATGTTTGCACAGTTCTCAGAACTTGTCAATGACTTCTACAATAATGGGTTACCTTCAAACCTTACTGCTAGTAGAAACCCAAGTTTGGATTATGGGTTCAAAGGCGCTGAGATTGCAATGGCTTCATATTGCTCTGAACTTCAATATTTGGCAAATCCAGTAACCAATCATGTTCAGAGTGCTGAACAACATAACCAAGACGTAAACTCATTAGGGTTGATATCATCGAGAAAAACAGCTGAAGCTATTGAGATTTTAAAGCTTATGTCCACTACTTACTTAGTGGCATTGTGCCAAGCTATTGATTTAAGACACATGGAGGAGAATTTGAAGAAAACAGTAAAGAACACTGTTAGCCAAGTGGCAAAAAAGATCCTTGTGTTGCATTTTAATGGCAATCTCCATCCATTTAGGTATAGTGAGAAGGATTTGCTTCAAGTTGTGGATAGAGAACACATTTTTACCTATATTGATGACCCCTGCAGTGTTTCATATCCATTAATGCAAAAGCTAAGACAGGTATTGGTAGATCATGCTATAAAAAATGGTGAGAACGAAAGCAACCCAAATGCTTCGATCTTTGGAAAAATCACAGCTTTTGAAGACGAATTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATGCGAGAAGGGAAGTAGAAAAAGGAAGTGCCGCAATTGAAAACCAAATCAAAGAATGCAAATCTTATCCATTGTACAAGTTTGTCAGAGAAACATTGGGAACTCGATTGTTGACGGGAGAGAGAGATGGATCACCGGGAGAAGAGTTCGATAAGGTTTTTACAGCTATTTCTGGTGGAAAATTGATAGATCCAATGCTTGAGTGTTTAAAGGATTGGAATGGTGCTCCACTTCCTCTGAGTTAG 2142 41.36 MEPRPENGHHGWEKEPSLCAGVAAYWSGAAKGLEGSHLEEFKRMVMEFRRSVVRLGGESLTIAQVAAIAARSSDVVVELSEEARSAVEASSRWVVESMTNGTDSYGVTTGFGSTSHRRTDQGEALQKELIRFLNAGIFGKDSNSCHTLSQQATRAAMVVRINTLLQGYSGIRFEILEAIAKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLNSNEAFHLAGITSGFFNLQPKEGLALVNGTAVGSGLASMVLFEANFLAILSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILYGSSYVKTTKKLHEIDSLQKPKQDRYALRTSPQWLGPQIEVIRYSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIEILKLMSTTYLVALCQAIDLRHMEENLKKTVKNTVSQVAKKILVLHFNGNLHPFRYSEKDLLQVVDREHIFTYIDDPCSVSYPLMQKLRQVLVDHAIKNGENESNPNASIFGKITAFEDELKALLPKEVENARREVEKGSAAIENQIKECKSYPLYKFVRETLGTRLLTGERDGSPGEEFDKVFTAISGGKLIDPMLECLKDWNGAPLPLS* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20347169 20350749 + CsaV3_6G036550.1 Csa06g02269 533896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02269 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 25 712 - -
Csa06g02269 713 CDD PAL-HAL 58 523 IPR001106 -
Csa06g02269 713 Gene3D - 19 259 IPR024083 -
Csa06g02269 713 SUPERFAMILY L-aspartase-like 25 712 IPR008948 GO:0003824
Csa06g02269 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa06g02269 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Csa06g02269 713 Gene3D - 526 647 IPR023144 -
Csa06g02269 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Csa06g02269 713 Coils Coil 631 651 - -
Csa06g02269 713 PANTHER HISTIDINE AMMONIA-LYASE 25 712 IPR001106 -
Csa06g02269 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02269 Csa-Chr6:20347169 Csa06g02581 Csa-Chr6:22809979 0 dispersed
Csa06g02269 Csa-Chr6:20347169 Csa06g02580 Csa-Chr6:22800389 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02269 K10775 - csv:101206890 1393.25