Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02351 ATGGCTTCTGAGTCTGGCAGTGTTGACTATACTCAACGTGCTCAGTGGCTCCGAGCAGCAATCCTAGGGGCCAACGATGGGCTCGTCTCTGTTGCGTCGCTCATGATGGGCGTTGGAGCCGTTAAGCCCGACGCCAAAGCCATGCTTATTGCAGGATTTGCAGGACTGGTTGCTGGAGCTTGTAGTATGGCGATAGGAGAGTTCGTTTCTGTTTACACTCAATATGATATTGAGAAAGCTCAGCTGAAGAGAAATGGGAAGGAAAAGAATAATAACATGGAACCAAACCACCCGGGTGAGGAGGAAGAGAAGCTGCCAAATCCACTACAGGCTGCGCTGGCATCGGCGATAGCGTTTTCGGTCGGAGCAGTCATTCCTTTGGTGGCAGCAGTGTTCATCCGAGACCATAAGGTGAGGCTGGGGGTGGTGGCAGCAGTGGCGAGCTTGACGCTGTTGGTTTTTGGGATAGTTGGAGCCATCTTGGGGAGAACTCCGGTTGGAAAATCAGCAGCAAGAGTGGTGGTTGGAGGGTGGATGGCTATGGCTATTACTTTTGGCCTTACAAAGCTGCTTGGCTCTAAGGGACTATGA 591 51.95 MASESGSVDYTQRAQWLRAAILGANDGLVSVASLMMGVGAVKPDAKAMLIAGFAGLVAGACSMAIGEFVSVYTQYDIEKAQLKRNGKEKNNNMEPNHPGEEEEKLPNPLQAALASAIAFSVGAVIPLVAAVFIRDHKVRLGVVAAVASLTLLVFGIVGAILGRTPVGKSAARVVVGGWMAMAITFGLTKLLGSKGL* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21042541 21043712 + CsaV3_6G037370.1 Csa06g02351 533978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02351 196 Pfam VIT family 102 188 IPR008217 GO:0005384|GO:0030026
Csa06g02351 196 Pfam VIT family 17 93 IPR008217 GO:0005384|GO:0030026
Csa06g02351 196 MobiDBLite consensus disorder prediction 83 104 - -
Csa06g02351 196 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 4 193 IPR008217 GO:0005384|GO:0030026
Csa06g02351 196 MobiDBLite consensus disorder prediction 83 105 - -
Csa06g02351 196 CDD Nodulin-21 15 165 - -
Csa06g02351 196 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 2.1 4 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01975 Csa-Chr5:23124197 Csa06g02351 Csa-Chr6:21042541 2.16E-08 dispersed
Csa06g02351 Csa-Chr6:21042541 Csa07g01425 Csa-Chr7:14477401 1.93E-64 dispersed
Csa06g02351 Csa-Chr6:21042541 Csa01g01661 Csa-Chr1:12403654 2.04E-75 transposed
Csa06g02351 Csa-Chr6:21042541 Csa06g00530 Csa-Chr6:4488732 2.04E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02351 K22736 - csv:101214875 352.829