Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02393 ATGACAATCGACCATATGTCCGATCAAACACGCACTTCCACCAGCAATAACGATCATGATTCCGACCATCTCCATCCTACTCTTCCCACGCCACTTCTCTCCAATGGCACGGACTACAATAATGCTGGAGATGACCTCTTTGTTCCTCCCTTGAACTTCGCTGTCGTTGACACCGGCATTTTTCGCTCTGGTTTCCCTGACTCTTCCAACTTCTCTTTCTTGCAGACATTAGGCCTTCGGTCTATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCTAGCATGGATTTCCTCAACTCCAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTTCTAAGGCTGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTACTTTTTGGAGCCTTTTGTCAACATTCCAGACTACACGATTCGTGAAGTACTTAAAATTATTCTTGATGTGAGGAATCGACCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGATGTGTAGTGGGATGCTTTAGAAAGGTGCAGAAATGGTGCCTATCGTCAGTGTTTGATGAGTATCAGAGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGATTCATTGAACTATTCGACATTTCTGAGTTGAAGCTTTTGCCATCATCATTTTCATGTTCCGAAAGATAA 720 43.75 MTIDHMSDQTRTSTSNNDHDSDHLHPTLPTPLLSNGTDYNNAGDDLFVPPLNFAVVDTGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEASMDFLNSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDMSADQMYFLEPFVNIPDYTIREVLKIILDVRNRPVLIHCKRGKHRTGCVVGCFRKVQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISELKLLPSSFSCSER* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21388398 21391747 - CsaV3_6G037790.1 Csa06g02393 534020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02393 239 MobiDBLite consensus disorder prediction 1 35 - -
Csa06g02393 239 CDD PFA-DSP_Siw14 46 223 - -
Csa06g02393 239 Pfam Tyrosine phosphatase family 48 227 IPR004861 -
Csa06g02393 239 ProSitePatterns Tyrosine specific protein phosphatases active site. 172 182 IPR016130 GO:0016311|GO:0016791
Csa06g02393 239 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 224 IPR029021 -
Csa06g02393 239 ProSiteProfiles Dual specificity protein phosphatase domain profile. 52 236 IPR020422 GO:0006470|GO:0008138
Csa06g02393 239 Gene3D Protein tyrosine phosphatase superfamily 46 226 IPR029021 -
Csa06g02393 239 PRINTS Plant and fungal dual specificity phosphatase signature 47 64 IPR020428 GO:0016791
Csa06g02393 239 PRINTS Plant and fungal dual specificity phosphatase signature 84 97 IPR020428 GO:0016791
Csa06g02393 239 PRINTS Plant and fungal dual specificity phosphatase signature 103 117 IPR020428 GO:0016791
Csa06g02393 239 PRINTS Plant and fungal dual specificity phosphatase signature 150 164 IPR020428 GO:0016791
Csa06g02393 239 PANTHER TYROSINE-PROTEIN PHOSPHATASE 1 238 - -
Csa06g02393 239 PANTHER - 1 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03339 Csa-Chr1:29942734 Csa06g02393 Csa-Chr6:21388398 2.35E-68 dispersed
Csa06g01343 Csa-Chr6:11293158 Csa06g02393 Csa-Chr6:21388398 1.97E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02393 K18045 - csv:101209768 407.527