Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02393 | ATGACAATCGACCATATGTCCGATCAAACACGCACTTCCACCAGCAATAACGATCATGATTCCGACCATCTCCATCCTACTCTTCCCACGCCACTTCTCTCCAATGGCACGGACTACAATAATGCTGGAGATGACCTCTTTGTTCCTCCCTTGAACTTCGCTGTCGTTGACACCGGCATTTTTCGCTCTGGTTTCCCTGACTCTTCCAACTTCTCTTTCTTGCAGACATTAGGCCTTCGGTCTATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCTAGCATGGATTTCCTCAACTCCAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTTCTAAGGCTGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTACTTTTTGGAGCCTTTTGTCAACATTCCAGACTACACGATTCGTGAAGTACTTAAAATTATTCTTGATGTGAGGAATCGACCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGATGTGTAGTGGGATGCTTTAGAAAGGTGCAGAAATGGTGCCTATCGTCAGTGTTTGATGAGTATCAGAGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGATTCATTGAACTATTCGACATTTCTGAGTTGAAGCTTTTGCCATCATCATTTTCATGTTCCGAAAGATAA | 720 | 43.75 | MTIDHMSDQTRTSTSNNDHDSDHLHPTLPTPLLSNGTDYNNAGDDLFVPPLNFAVVDTGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEASMDFLNSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDMSADQMYFLEPFVNIPDYTIREVLKIILDVRNRPVLIHCKRGKHRTGCVVGCFRKVQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISELKLLPSSFSCSER* | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 21388398 | 21391747 | - | CsaV3_6G037790.1 | Csa06g02393 | 534020 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02393 | 239 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Csa06g02393 | 239 | CDD | PFA-DSP_Siw14 | 46 | 223 | - | - | |
Csa06g02393 | 239 | Pfam | Tyrosine phosphatase family | 48 | 227 | IPR004861 | - | |
Csa06g02393 | 239 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 172 | 182 | IPR016130 | GO:0016311|GO:0016791 | |
Csa06g02393 | 239 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 47 | 224 | IPR029021 | - | |
Csa06g02393 | 239 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 52 | 236 | IPR020422 | GO:0006470|GO:0008138 | |
Csa06g02393 | 239 | Gene3D | Protein tyrosine phosphatase superfamily | 46 | 226 | IPR029021 | - | |
Csa06g02393 | 239 | PRINTS | Plant and fungal dual specificity phosphatase signature | 47 | 64 | IPR020428 | GO:0016791 | |
Csa06g02393 | 239 | PRINTS | Plant and fungal dual specificity phosphatase signature | 84 | 97 | IPR020428 | GO:0016791 | |
Csa06g02393 | 239 | PRINTS | Plant and fungal dual specificity phosphatase signature | 103 | 117 | IPR020428 | GO:0016791 | |
Csa06g02393 | 239 | PRINTS | Plant and fungal dual specificity phosphatase signature | 150 | 164 | IPR020428 | GO:0016791 | |
Csa06g02393 | 239 | PANTHER | TYROSINE-PROTEIN PHOSPHATASE | 1 | 238 | - | - | |
Csa06g02393 | 239 | PANTHER | - | 1 | 238 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03339 | Csa-Chr1:29942734 | Csa06g02393 | Csa-Chr6:21388398 | 2.35E-68 | dispersed | |
Csa06g01343 | Csa-Chr6:11293158 | Csa06g02393 | Csa-Chr6:21388398 | 1.97E-95 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02393 | K18045 | - | csv:101209768 | 407.527 |