Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02395 ATGCGGCGAGGTAGAGCCACGGATCCATTGACGGTGCCAGAATCAGTCCAAAAACCTGTTAAAGAAGTCCGATTCAGAGGCGTTCGGAAGCGTCCATGGGGACGATACGCCGCCGAGATTAGAGATCCTTGGAAGAAAACTCGAGTTTGGCTAGGTACCTTCGATACGGCGGAGGATGCTGCCAGAGCTTACGATGAAGCTGCTCTCTCCCTTCGAGGACCGAAGGCGAAAACGAACTTCCCTTTGCATCCATCTACTATCTCTGTTCATCAACAAATTCCATTCTCGCAGCAGTTTCATGATTCCGGTGGATTCTGTGAGATTAGTAACATTATTCCAGTTAATAGACCTACATCGAGTAGTCTGAGCTCCACCGTGGAGTCATTTAGCGGTCCACGGCTTTCGATTCCGGCTCCGTCGGTTCCAAAGCTTCGCCGGAAGTCCCTGCCGCAGGTTGCTCCCGACGATTGCCATAGCGACTGTGATTCGTCGTCTTCGGTTGTTGATGACAGTGAGGAATATGCTCACTCGTCGTCAATTCGTAGAGTGTTGCCGTTCGATCTGAATCTACCTCCTCCACTGCCGCCGCCGCATGACGTCGATTTATCCGGTGATGATCTTCATGCCACTGCTCTGTATTTTTGA 645 51.16 MRRGRATDPLTVPESVQKPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQQFHDSGGFCEISNIIPVNRPTSSSLSSTVESFSGPRLSIPAPSVPKLRRKSLPQVAPDDCHSDCDSSSSVVDDSEEYAHSSSIRRVLPFDLNLPPPLPPPHDVDLSGDDLHATALYF* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21412666 21415452 + CsaV3_6G037810.1 Csa06g02395 534022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02395 214 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Csa06g02395 214 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Csa06g02395 214 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Csa06g02395 214 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Csa06g02395 214 MobiDBLite consensus disorder prediction 140 172 - -
Csa06g02395 214 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Csa06g02395 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 18 188 - -
Csa06g02395 214 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Csa06g02395 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 188 - -
Csa06g02395 214 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Csa06g02395 214 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g02395 Csa07g00482 CCT
Csa06g02395 Csa07g00482 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00483 Csa-Chr3:4074143 Csa06g02395 Csa-Chr6:21412666 5.38E-39 dispersed
Csa04g02652 Csa-Chr4:25867321 Csa06g02395 Csa-Chr6:21412666 2.36E-25 dispersed
Csa06g02395 Csa-Chr6:21412666 Csa06g03646 Csa-Chr6:29349705 3.10E-31 dispersed
Csa07g02109 Csa-Chr7:20295175 Csa06g02395 Csa-Chr6:21412666 5.23E-25 dispersed
Csa06g01353 Csa-Chr6:11476337 Csa06g02395 Csa-Chr6:21412666 3.22E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32073 PF00847 AP2 6.20E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02395 K09286 - csv:101210265 374.4