Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02399 ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGGGTTTGTGGCCATTATCACAAATATGAGGAAGGGGAAGTTTGTGGGATTTGTGGTCATCGTGTTCCTGCTACATCGGAGAAAACTTCTCTGCAAGTTAGTGCTTTTCCTTCTGAGATCTTGCCGGAGTTTCTTTATTTGGGAAGCTATGATAACGCTTCACGCTCTGAACTTTTGAAGACTCAAGGAATCTCCCGCGTTCTTAATACTGTGCCTGCTTGCCAAAATCTCTACAAGAACTCCTTCACATATCACTGTCTCCAATATGATAAGACTTTACCTTTTGATGACGCGGTTGAATTTCTAGAGCTATGTGAAAGAGACAAGGCTCGGGTTCTAGTGCACTGCATGTCAGGAAAAAATAGGTCTTCAGCTATTGTTATAGCATTCTTGATGAAATGTAAAGGTTGGAGACTTGCTCAGAGTTATCAATGGGTGAAAGAACGGAGGCCGTCCGTTGAATTAACTGAATCTATTCTTCAGCAGCTGCAAGCGTATGAGCAGAAGGTTTTCGGATTACCAGAAAACTCCCTCCCAACCCTGCCAATCCTCCCTCCTGTTGGTCTGCCTTCGTTTGGCTTTGGCTTCCCGAAGACTGGCGACCCAGTTCCTATAACTCCATTCAACACCATTGGTGCAACATCAATCTTCTCCCGCCCGACCATAGATGTACCCTCCCACGAGTTTACATTTGGTGCTGGCCAAACTCAAAACAGTTTCTCTTCAAATCCCTTTGGCGCTAATCCACGAAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAA 819 45.18 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLELCERDKARVLVHCMSGKNRSSAIVIAFLMKCKGWRLAQSYQWVKERRPSVELTESILQQLQAYEQKVFGLPENSLPTLPILPPVGLPSFGFGFPKTGDPVPITPFNTIGATSIFSRPTIDVPSHEFTFGAGQTQNSFSSNPFGANPRNSTSSNIQMDSA* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21432521 21436036 - CsaV3_6G037850.1 Csa06g02399 534026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02399 272 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470|GO:0008138
Csa06g02399 272 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311|GO:0016791
Csa06g02399 272 Gene3D Protein tyrosine phosphatase superfamily 30 182 IPR029021 -
Csa06g02399 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 271 - -
Csa06g02399 272 MobiDBLite consensus disorder prediction 243 272 - -
Csa06g02399 272 SMART dsp_5 46 179 IPR020422 GO:0006470|GO:0008138
Csa06g02399 272 CDD DSP_plant_IBR5-like 47 176 - -
Csa06g02399 272 Pfam Dual specificity phosphatase, catalytic domain 55 178 IPR000340 GO:0008138|GO:0016311
Csa06g02399 272 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Csa06g02399 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 271 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Csa06g02399 272 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 183 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01564 Csa-Chr6:13196304 Csa06g02399 Csa-Chr6:21432521 3.93E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02399 K04459 - csv:101211000 562.762