Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02406 ATGGGGGTCAAATCTCAATATCCAAATCGAGTCAGATCTGCCAAACTTCATTTCTTCTATGCAATTCTTCTGTTGCAGTTTGCTACCTTCGGATTAGCTGCCGCAGCCAAGCTTCACCGAGAAGAAGTGAAAGCGTTGAAAGAGATCGAGAAGAAATTAGGGAAAAATGACTGGGATTTTAACATAGATCCTTGCAGTGGTGAAGGAAAATGGCACGTTGTTAATGGAAGAAAAGGGTTCGAAAGCTCTGTCACCTGTGATTGCTCTTTCAACCATAACTCCACTTGCCACATCGTCGCCATAGCTTTGAAGTCCCAGAATCTATCAGGCATTGTGCCACCAGAGTTTTCCAAGCTTCGGTTCCTCAAACAGCTAGATCTCAGTCGAAACTGCCTCACTGGTTTTGTTCCTTCACAATGGGCTACCATGCGATTGGTAGAACTCTCTTTCATGGGAAATAAATTGTCCGGGCCATTCCCGAAAGTTCTTACTAATATCACCACCCTCAGAAACTTGAGCATCGAAGGAAATCAATTTTCTGGCCGAATTCCACCAGAAATTGGAAAACTAGTTAATTTGGAAAAATTAGTTCTGTCATCAAATGGCCTCACCGGAGAATTGCCTAAAGGGCTAGCGAAATTGTCGAACTTAACTGATATGAGAATAAGTGACAACAACTTCTCTGGAAAGATACCTGAGTTCATTAGTAACTGGGCACAGATTGAAAAACTGCATATACAAGGCTGCTCCCTCGAGGGTCCTATACCCTTAAGTATCTCCACAATGACAAGTTTAACTGATCTGAGAATATCTGACTTAAAAGGTGGAAGGTCTCCTTTTCCGCCGTTGAGCAATATAAAATCCATGAAGACACTGATACTGAGGAAGTGCTTCATTTTTGGTGAAATCCCGAAATACATCGGGGATATGAAAAAATTAAAAAACTTAGACCTCAGCTACAATGACTTGACTGGCGAAGTTCCTGCAACTTTTGAACGACTGGATAAAATAGATTACATATTTTTGACAGCAAACAAGCTCAATGGAATTATTCCTGGTTGGATTTTAGGGAGCAACAAGAACGTAGATCTCTCTAACAACAATTTCACCTGGGAAAACTCAAGCCCAGCTGAGTGTCCTCGTGGTAGTGTAAATTTAGTTGAGACATACTCACCGTCTGCAGAAAAATTAACTAGAATCCATCCCTGCCTAAAAAGGAACTTTCCATGTTCTGCATCAAGGGAAGAGCATCACTACTCCTTGCGCATTAACTGTGGCGGTAAAGAAACATCTATAAGGGGTGAAAGGTATGAAGCAGATAGAGAAGGTGCTTCAATGTTTTATACTGGTCAGAATTGGGCTTTTAGCAGCACCGGAAGCTTTATGGACAATGATGTTGATGCTGATAACTACATCGTAACAAATACATCTGCTCTTTCTAACGTCTCTGCGACTTATTCAGAACTGTATACAAAAGCGAGAAACTCTCCTCAATCTCTTACATACTATGGGCTATGTCTCATAAATGGGAATTATACTGTTAAACTCCACTTTGCAGAGATTGTATTTATAAATGACAGTTCATTCAACAGCCTGGGAAGGCGAGTTTTTGATGTGTACATTCAGGAAAAGCTAGTCCTGAAAGATTTTGATATTGAACATGAAGCAGGGGGTACAGGTAAGCCCATTATAAAAAAAATTACTGTAGCTGTCACAAGTCATACATTGAAGATCCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATTCCACTTAGAGGAAATTATGGTCCTCTGATATCAGCTATTTCTGTAGATCCCAATTTTACACCCCCTAAAAACCATGGGAAGAAGGATTTCACCATCATAATTATTGGGACAGCAGCAGCAGCTTTTGTTCTCCTTCTTCTGGTGTTATGTATTATGAGGAGGAAAGGGTGGCTGGGAGGCAAGGCATCCGTATATAAAGAGCTTAGAGGTATAGATCTGCAAACAGGATTATTTACAATAAGACAGATTAAAGCAGCCACTAAAAATTTTGATGCTGCAAACAAAGTTGGTGAAGGTGGTTTTGGTGCGGTTTACAAGGGTCTCTTGTCAGATGGTACTATAATTGCAGTCAAGCAGCTGTCGTCAAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCTGCACTGCAACATCCAAATCTTGTGAAGCTTTATGGATGTTGTATTGATGGGAACCAACTAATGTTGATTTATGAATACATGGAAAATAATTGCTTATCACGTGCACTTTTCAGAAATGACCCAGGTTCTAAATTGAAGTTGGACTGGCCAACCAGGCAGAAAATTTGTCTGGGAATAGCTAGAGGTTTGGCCTATCTGCATGAGGAGTCGAGACTGAAAATCGTACATAGGGATATCAAGACAAGTAATGTGCTGCTTGATAAGGATTTCAGTGCTAAAATTTCTGATTTTGGCTTGGCTAAGCTTCATGAAGATGACAATACCCATATCAGTACTAGAGTTGCCGGAACCATTGGTTATATGGCACCTGAATATGCAATGCGTGGATGCTTGACCAGCAAAGCTGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATTGTCAGTGGCAAAAGCAATACCAACTACATGCCTAAAGAGGATTTTGTTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAAGGAAGTCTATTGGAGTTGGTGGATCCAACCTTGGGGTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTGAATGTGGCTCTCCTCTGCACCAACGCATCCCCAACTCTTCGGCCTCTAATGTCGCAAGTGGTCAGCATGCTCGAAGGACGAACTCCAGTTCAAGCACTTCTTTCTGATCCAGGATTTTCAGCCATCAATTCCAAATTGAAAGCTCTCAGAAATCACTTTTGGCAACAATTGAGCCCTACACACAGTTTATCGTTGGACGATTTCCCTAGTGATTCGTTGAGTTCGAATGTGGATCTGGAGGCAGAGGAGAATTATAATCTAGTAAGATCCAATTCTATTAACAAGACTGGAAACAAAAATTAG 3087 40.82 MGVKSQYPNRVRSAKLHFFYAILLLQFATFGLAAAAKLHREEVKALKEIEKKLGKNDWDFNIDPCSGEGKWHVVNGRKGFESSVTCDCSFNHNSTCHIVAIALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTGFVPSQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGRIPPEIGKLVNLEKLVLSSNGLTGELPKGLAKLSNLTDMRISDNNFSGKIPEFISNWAQIEKLHIQGCSLEGPIPLSISTMTSLTDLRISDLKGGRSPFPPLSNIKSMKTLILRKCFIFGEIPKYIGDMKKLKNLDLSYNDLTGEVPATFERLDKIDYIFLTANKLNGIIPGWILGSNKNVDLSNNNFTWENSSPAECPRGSVNLVETYSPSAEKLTRIHPCLKRNFPCSASREEHHYSLRINCGGKETSIRGERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIVTNTSALSNVSATYSELYTKARNSPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGRRVFDVYIQEKLVLKDFDIEHEAGGTGKPIIKKITVAVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTPPKNHGKKDFTIIIIGTAAAAFVLLLLVLCIMRRKGWLGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIDGNQLMLIYEYMENNCLSRALFRNDPGSKLKLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFSAKISDFGLAKLHEDDNTHISTRVAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSGKSNTNYMPKEDFVYLLDWASVLQEKGSLLELVDPTLGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTHSLSLDDFPSDSLSSNVDLEAEENYNLVRSNSINKTGNKN* 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21476372 21486868 + CsaV3_6G037920.1 Csa06g02406 534033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02406 1028 CDD STKc_IRAK 686 954 - -
Csa06g02406 1028 Gene3D Phosphorylase Kinase; domain 1 651 755 - -
Csa06g02406 1028 Gene3D Ribonuclease Inhibitor 276 378 IPR032675 -
Csa06g02406 1028 ProSitePatterns Protein kinases ATP-binding region signature. 686 708 IPR017441 GO:0005524
Csa06g02406 1028 Pfam Protein tyrosine and serine/threonine kinase 683 896 IPR001245 GO:0004672|GO:0006468
Csa06g02406 1028 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 74 1000 - -
Csa06g02406 1028 SUPERFAMILY L domain-like 86 370 - -
Csa06g02406 1028 Pfam Malectin domain 420 603 IPR021720 -
Csa06g02406 1028 Gene3D - 416 607 - -
Csa06g02406 1028 SMART serkin_6 680 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02406 1028 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 1000 - -
Csa06g02406 1028 SUPERFAMILY Protein kinase-like (PK-like) 665 953 IPR011009 -
Csa06g02406 1028 Gene3D Ribonuclease Inhibitor 39 275 IPR032675 -
Csa06g02406 1028 Gene3D Transferase(Phosphotransferase) domain 1 756 961 - -
Csa06g02406 1028 ProSiteProfiles Protein kinase domain profile. 680 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02406 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Csa06g02406 1028 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01012 Csa-Chr1:6279057 Csa06g02406 Csa-Chr6:21476372 2.09E-62 dispersed
Csa04g02261 Csa-Chr4:23231069 Csa06g02406 Csa-Chr6:21476372 4.58E-16 dispersed
Csa04g02262 Csa-Chr4:23235696 Csa06g02406 Csa-Chr6:21476372 0 dispersed
Csa04g02263 Csa-Chr4:23267886 Csa06g02406 Csa-Chr6:21476372 0 dispersed
Csa04g02264 Csa-Chr4:23281506 Csa06g02406 Csa-Chr6:21476372 1.23E-65 dispersed
Csa06g02406 Csa-Chr6:21476372 Csa07g01190 Csa-Chr7:11679101 0 dispersed
Csa06g02406 Csa-Chr6:21476372 Csa04g02258 Csa-Chr4:23201564 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78390 PF07714 PK_Tyr_Ser-Thr 1.80E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02406 - - csv:101219400 2041.16