Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02409 ATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTCTCTCGATTCACTCTCCATCTTCCCTCCAAACCTTCCTTCTTTCACTCCAAACAAACCCCACTTTCAACTCCACATTCCACTCTTACAGACCAACTTCCCACTTCCAATTCTTCCCAACCCCTTCAATCCCAAATTCTCTCCATCCGCCATTCACTTCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGACTCCTATCTCAATCGCCTTCGTGCTTTGGAGCCTCACCTCAAGTCATTTCTCCACGTCTCTGAAACTGTCCGCTCTGATGCCCGTGAGATTGATGACAAAATTCTCAGAAATGAGGAACTGGGTCCTTTAGCTGGGGTGCTTGTGGCCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGCTGGGTCTCGGATTCTTGATGGATATCGCCCACCATTTGACGCTACTGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGATTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGCTCTACTGAAGCCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGGGTCCCGGGAGGATCATCAGGAGGATCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGGTTGAAACCAACATATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCTTCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATTCAATTTCTGGTCATGATACCCTTGATGCCACTAGTAGTAAACGAGAGGTTTCTGATTTCACATCACAATTTTCTGCCGTTGATTCATTCGAATCTAAACCCTTGAGAGGATTGAGGATTGGCCTGATTCGTGAAACCCTTGATAAGGGTGTCGATGGTCAAGTAAATTCTGCTATACGTGCTGCTGCTTCACATCTAGAAGAATTAGGATGTTCCATCAATGAGGTATCACTACCATCATTTTCTCTTGGGCTGCCAGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCACGATATGATGGTGTCAGATATGGAAATCAAGCTATTGCTGATGAGCTAACTGGTCTATATGAAAATTCCCGAGCAACAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACAATTATCCAGAAAAGCTTCAGAGCAGCACTAGATGAATATGACATCTTAATATCACCTACTGCACCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGATGACCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTGGCTGGACTACCTGCATTGGTATTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGCTTTTGATGAGGGCAAACTTCTTAAAGTGGGACACATCTTCGAACAAACTCTTGCCGACTGCAGATTTGTTCCACCCTTACTAGCTGACGACATTATTCTAAACTTTTTAACCGCTTGTCTGATTATTGGCAAAATTTCCATCGGCTTCGGATCGGATCCCTCTGGAGAGTTGAGCAGAGTCTACAAGATCGCTGTCCCTTTTGGAATCTCGGTCGATTCATTGTTCCGATCTATTCCATCTGTTTTCCGACGAATCTCCGGCCATTTCGTACTCCTCCGACAGCAGATATCGAAAAAGATGTCGGGCCAAACCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCTATGAAAGCTCGTCTGGTTGGTGCAACCAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTTTGACTGTTCAGTTCCGTCAGATACTTAAGAAGATTGTTTCAGCCAAGGAATCAATGGGAGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAACATCAAGCATATTGTCCTGGAGAATGTTCAAACTGCAGCTATCAAGATTCGATCTCGACAGGAGAATATTGCTGGTGTGAAACTCCCGAAATTTGAACATTATTCTGATGGTGAGACCAAAAATGATCTCACAGGGTTAGCTAGGGGTGGTCAACAGATCCAGCTGTGTCGGGGTGCCTATGTTAAAGCAATTGAGGTTCTTGTTGAGCTTGCTTCACTCCAGACATCATTTTTGACCCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAATGCTCTTGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATACAGGGTTATAAGAGAAGGGAAATTGAGAGACAACGAGCCAACGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAAGGTATCTTTGCAAAAGGGTGTCTCCATAAGCTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGACGAGGATATTATTTTTTGA 2634 44.72 MLSTLQPPRCSLSRFTLHLPSKPSFFHSKQTPLSTPHSTLTDQLPTSNSSQPLQSQILSIRHSLLSRQITATQLADSYLNRLRALEPHLKSFLHVSETVRSDAREIDDKILRNEELGPLAGVLVAVKDNICTAGMPSTAGSRILDGYRPPFDATAVKRIKELGGIVIGKTNLDEFGMGSSTEASAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHSISGHDTLDATSSKREVSDFTSQFSAVDSFESKPLRGLRIGLIRETLDKGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAIADELTGLYENSRATGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDEYDILISPTAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGKLLKVGHIFEQTLADCRFVPPLLADDIILNFLTACLIIGKISIGFGSDPSGELSRVYKIAVPFGISVDSLFRSIPSVFRRISGHFVLLRQQISKKMSGQTQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQTAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIERQRANAKLFAEEQLAEKVSLQKGVSISSAHNLLSAAAEKDEDIIF* 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21506697 21514279 + CsaV3_6G037950.1 Csa06g02409 534036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02409 877 Pfam ATP synthase subunit D 633 824 IPR002699 GO:0046961
Csa06g02409 877 ProSitePatterns Amidases signature. 200 231 IPR020556 -
Csa06g02409 877 Pfam Amidase 75 524 IPR023631 -
Csa06g02409 877 Gene3D - 616 814 - -
Csa06g02409 877 PANTHER TRANSAMIDASE 54 531 IPR000120 GO:0003824
Csa06g02409 877 MobiDBLite consensus disorder prediction 27 52 - -
Csa06g02409 877 TIGRFAM gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 62 534 IPR004412 GO:0006412|GO:0030956|GO:0050567
Csa06g02409 877 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 60 535 IPR004412 GO:0006412|GO:0030956|GO:0050567
Csa06g02409 877 Gene3D Amidase signature (AS) domain 52 538 IPR036928 -
Csa06g02409 877 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL 54 531 - -
Csa06g02409 877 TIGRFAM V_ATPase_subD: V-type ATPase, D subunit 625 827 IPR002699 GO:0046961
Csa06g02409 877 SUPERFAMILY Amidase signature (AS) enzymes 55 541 IPR036928 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02409 Csa-Chr6:21506697 Csa07g00640 Csa-Chr7:4601608 1.01E-39 dispersed
Csa06g02409 Csa-Chr6:21506697 Csa07g00085 Csa-Chr7:799707 4.65E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02409 K02433 - csv:101212627 1055.82