Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02409 ATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTCTCTCGATTCACTCTCCATCTTCCCTCCAAACCTTCCTTCTTTCACTCCAAACAAACCCCACTTTCAACTCCACATTCCACTCTTACAGACCAACTTCCCACTTCCAATTCTTCCCAACCCCTTCAATCCCAAATTCTCTCCATCCGCCATTCACTTCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGACTCCTATCTCAATCGCCTTCGTGCTTTGGAGCCTCACCTCAAGTCATTTCTCCACGTCTCTGAAACTGTCCGCTCTGATGCCCGTGAGATTGATGACAAAATTCTCAGAAATGAGGAACTGGGTCCTTTAGCTGGGGTGCTTGTGGCCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGCTGGGTCTCGGATTCTTGATGGATATCGCCCACCATTTGACGCTACTGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGATTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGCTCTACTGAAGCCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGGGTCCCGGGAGGATCATCAGGAGGATCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGGTTGAAACCAACATATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCTTCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATTCAATTTCTGGTCATGATACCCTTGATGCCACTAGTAGTAAACGAGAGGTTTCTGATTTCACATCACAATTTTCTGCCGTTGATTCATTCGAATCTAAACCCTTGAGAGGATTGAGGATTGGCCTGATTCGTGAAACCCTTGATAAGGGTGTCGATGGTCAAGTAAATTCTGCTATACGTGCTGCTGCTTCACATCTAGAAGAATTAGGATGTTCCATCAATGAGGTATCACTACCATCATTTTCTCTTGGGCTGCCAGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCACGATATGATGGTGTCAGATATGGAAATCAAGCTATTGCTGATGAGCTAACTGGTCTATATGAAAATTCCCGAGCAACAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACAATTATCCAGAAAAGCTTCAGAGCAGCACTAGATGAATATGACATCTTAATATCACCTACTGCACCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGATGACCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTGGCTGGACTACCTGCATTGGTATTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGCTTTTGATGAGGGCAAACTTCTTAAAGTGGGACACATCTTCGAACAAACTCTTGCCGACTGCAGATTTGTTCCACCCTTACTAGCTGACGACATTATTCTAAACTTTTTAACCGCTTGTCTGATTATTGGCAAAATTTCCATCGGCTTCGGATCGGATCCCTCTGGAGAGTTGAGCAGAGTCTACAAGATCGCTGTCCCTTTTGGAATCTCGGTCGATTCATTGTTCCGATCTATTCCATCTGTTTTCCGACGAATCTCCGGCCATTTCGTACTCCTCCGACAGCAGATATCGAAAAAGATGTCGGGCCAAACCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCTATGAAAGCTCGTCTGGTTGGTGCAACCAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTTTGACTGTTCAGTTCCGTCAGATACTTAAGAAGATTGTTTCAGCCAAGGAATCAATGGGAGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAACATCAAGCATATTGTCCTGGAGAATGTTCAAACTGCAGCTATCAAGATTCGATCTCGACAGGAGAATATTGCTGGTGTGAAACTCCCGAAATTTGAACATTATTCTGATGGTGAGACCAAAAATGATCTCACAGGGTTAGCTAGGGGTGGTCAACAGATCCAGCTGTGTCGGGGTGCCTATGTTAAAGCAATTGAGGTTCTTGTTGAGCTTGCTTCACTCCAGACATCATTTTTGACCCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAATGCTCTTGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATACAGGGTTATAAGAGAAGGGAAATTGAGAGACAACGAGCCAACGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAAGGTATCTTTGCAAAAGGGTGTCTCCATAAGCTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGACGAGGATATTATTTTTTGA 2634 44.72 MLSTLQPPRCSLSRFTLHLPSKPSFFHSKQTPLSTPHSTLTDQLPTSNSSQPLQSQILSIRHSLLSRQITATQLADSYLNRLRALEPHLKSFLHVSETVRSDAREIDDKILRNEELGPLAGVLVAVKDNICTAGMPSTAGSRILDGYRPPFDATAVKRIKELGGIVIGKTNLDEFGMGSSTEASAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHSISGHDTLDATSSKREVSDFTSQFSAVDSFESKPLRGLRIGLIRETLDKGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAIADELTGLYENSRATGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDEYDILISPTAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGKLLKVGHIFEQTLADCRFVPPLLADDIILNFLTACLIIGKISIGFGSDPSGELSRVYKIAVPFGISVDSLFRSIPSVFRRISGHFVLLRQQISKKMSGQTQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQTAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIERQRANAKLFAEEQLAEKVSLQKGVSISSAHNLLSAAAEKDEDIIF* 878
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 21506697 21514279 + CsaV3_6G037950.1 Csa06g02409 534036

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02409 877 Pfam ATP synthase subunit D 633 824 IPR002699 GO:0046961
Csa06g02409 877 ProSitePatterns Amidases signature. 200 231 IPR020556 -
Csa06g02409 877 Pfam Amidase 75 524 IPR023631 -
Csa06g02409 877 Gene3D - 616 814 - -
Csa06g02409 877 PANTHER TRANSAMIDASE 54 531 IPR000120 GO:0003824
Csa06g02409 877 MobiDBLite consensus disorder prediction 27 52 - -
Csa06g02409 877 TIGRFAM gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 62 534 IPR004412 GO:0006412|GO:0030956|GO:0050567
Csa06g02409 877 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 60 535 IPR004412 GO:0006412|GO:0030956|GO:0050567
Csa06g02409 877 Gene3D Amidase signature (AS) domain 52 538 IPR036928 -
Csa06g02409 877 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL 54 531 - -
Csa06g02409 877 TIGRFAM V_ATPase_subD: V-type ATPase, D subunit 625 827 IPR002699 GO:0046961
Csa06g02409 877 SUPERFAMILY Amidase signature (AS) enzymes 55 541 IPR036928 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02409 K02433 gatA, QRSL1; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] - csv:101212627 1055.82
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02409 Csa-Chr6:21506697 Csa07g00640 Csa-Chr7:4601608 1.01E-39 dispersed
Csa06g02409 Csa-Chr6:21506697 Csa07g00085 Csa-Chr7:799707 4.65E-38 transposed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g01881 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1619.0
Csa06g01652 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.2
Csa02g02102 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.3 1.0e-295 1012.7
Csa07g00020 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.4 1.4e-295 1012.3
Csa07g00020 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1229.9
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1204.9
Csa06g01652 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.1 6.6e-298 1020.0
Csa07g00020 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.3
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1199.9
Csa06g01652 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G34720 100.0 4.5e-61 230.7
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa03g01099 . 2 166 Primary Pumps ATPases(2) AT1G75630 81.4 2.7e-67 251.9
Csa02g02112 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa02g02113 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa03g01099 . 3 166 Primary Pumps ATPases(2) AT2G16510 99.4 5.4e-74 273.9
Csa02g02112 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 9.2e-74 273.1
Csa02g02113 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
Csa02g02112 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
Csa02g02113 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g01099 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g04355 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Csa02g02355 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.8e-70 261.5
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.3e-60 229.2
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa03g04355 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Csa02g02355 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.4e-71 266.2
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1665.6
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1667.5
Csa02g01881 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1619.0
Csa01g02374 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1312.0
Csa01g03136 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Csa07g00121 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.4e-268 921.8
Csa05g01396 . 1 377 Primary Pumps ATPases(2) AT1G12840 83.0 1.8e-181 632.1
Csa06g02409 . 617 878 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Csa03g03694 . 3 455 Primary Pumps ATPases(2) AT3G42050 79.7 3.4e-208 721.1
Csa03g01099 . 3 166 Primary Pumps ATPases(2) AT2G16510 99.4 5.4e-74 273.9
Csa02g02112 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 9.2e-74 273.1
Csa02g02113 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
Csa07g00121 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Csa03g02469 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Csa07g00121 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Csa06g01652 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.2
Csa02g02102 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.3 1.0e-295 1012.7
Csa07g00020 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.4 1.4e-295 1012.3
Csa03g03857 . 1 352 Primary Pumps ATPases(2) AT3G28715 92.0 4.5e-192 667.2
Csa03g02469 . 1 230 Primary Pumps ATPases(2) AT4G11150 76.6 5.7e-90 327.4
Csa07g02282 . 1 624 Primary Pumps ATPases(2) AT1G78900 92.6 0.0e+00 1166.4
Csa07g00121 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.4e-268 921.8
Csa07g00121 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Csa07g00121 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Csa05g01396 . 1 377 Primary Pumps ATPases(2) AT1G12840 83.0 1.8e-181 632.1
Csa06g02409 . 617 878 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Csa03g02469 . 1 230 Primary Pumps ATPases(2) AT4G11150 76.6 5.7e-90 327.4
Csa03g02469 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 1.1e-75 280.0
Csa03g02469 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Csa01g03136 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Csa03g03694 . 3 455 Primary Pumps ATPases(2) AT3G42050 79.7 3.4e-208 721.1
Csa06g01652 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.2
Csa02g02102 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.3 1.0e-295 1012.7
Csa07g00020 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.4 1.4e-295 1012.3
Csa07g00020 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1229.9
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1204.9
Csa06g01652 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.1 6.6e-298 1020.0
Csa07g00020 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.3
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1199.9
Csa06g01652 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G34720 100.0 4.5e-61 230.7
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa02g02112 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
Csa02g02113 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g01099 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.3e-60 229.2
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa03g01099 . 2 166 Primary Pumps ATPases(2) AT1G75630 81.4 2.7e-67 251.9
Csa02g02112 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa02g02113 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa03g01099 . 3 166 Primary Pumps ATPases(2) AT2G16510 99.4 5.4e-74 273.9
Csa02g02112 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 9.2e-74 273.1
Csa02g02113 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
Csa03g04355 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Csa02g02355 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.4e-71 266.2
Csa03g04355 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Csa02g02355 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.8e-70 261.5
Csa03g03857 . 1 352 Primary Pumps ATPases(2) AT3G28710 94.3 3.9e-199 690.6
Csa03g03857 . 1 352 Primary Pumps ATPases(2) AT3G28715 92.0 4.5e-192 667.2
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1665.6
Csa01g02374 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1312.0
Csa02g01881 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1619.0
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1667.5
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007559 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 1 1 1 1 2 1 1 35