Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02415 ATGCTCTCTTTTTTAGCTGCAATACTGTTAATAATATCGATTGCTTTTGTGTTGAGAAGCACTAAGAGAAGCAGAAATGTCCCACCAGGGGCAATGGGTCTACCTTGGATTGGAGAAACAATGGTTTTTTACAGAGCTCAAAGTAAAAACAGATTGTTTGAAGACTTTGTTGAGCCAAGAGTTGCAAAATATGGAAAAATCTTCAAAACAAACTTAATGGGATCTCCAACAGTGGTTGTTAATGGAGCTGAAGCCAATAGATTTTTCTTGTCAAATGAGTTTAAGTTAGTGGTAAGTTCATGGCCATCGAGCTCTGTTCAGTTGATGGGTGAAGAATGTATTATGCAGAAGGAAGGTGAAAAGCATAGATGTGTTCGTGGTCTTATAGCTGCAACTCTTTCTACTTCGAGTCTTGACGTTATGATGCCTAAACTGTGCAATACAATTCAAGTTTATTTGGATACTAAATGGGTTGGTTGTGACACAATTGGTCTCTTTCACTCGGCTAAAGTATTGACATTTACAATTGTGTTTGAGTGTTTATTGGGTATTCAAGTGGAGCCACGTGTGTTGACGATGTTCGAGAGGGTTTTGGAAGGTGTTTTTGCACCACCATTCAGGTTTCCAGGAACAAGATTTTCAAGAGCCAAGAAAGCAAGACTGGAGATAGAGACAACGCTAAGGGAAGTGGTGAGAGAAAAGAGGAGAAAAATAGAAGGAAAGCTAGAAGAAGAAGAATGTGGGTCATTGCTTTCAAGGATGGTGAGAGCAATGATAGGAGGGGAAATCAGTGAAATGGAAGTCATAGACAATATTGTTTTGCTTGTTTTTGCAGCTCATGATACAACCTCCTTTGCCATTGCCATGACTTTCAAAATGTTGTCTCAGCACACAAATTGCTACACACTTCTTCTCCAGGAACACACTGACATAATAAGAAGCAAGGGGCCAGGCCAGAATTTGACAATGGAAGACATAAAGAAGATGAAATATACTTGGCAGGTAGCTCGTGAGAGCATTAGGTTGTTTCCCCCTATATTTGGTTCTTTCAGGAAAGCCATTTCAGACATTGAATATGAGAGCTTTCTCATTCCCAAAGGATGGAAGGTCTTGTGGACGACGTACGGAACACATTACGGAGAAGAGTACTTTGAGGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCACAGTATGTTTATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAACTAGCGAAATTGAACATACTCATTTTTGTACACTCGGTTGTAACTCGTTATGATTGGAGTTTAGTTCATCCAGATGAGCCAATCATAATGGATCCTCTCCCTGTCCCTTATCATGGAATGCCTATTAAAATTTCCCCAAAATCACAAGTTTGTTCCAACGTTCACCAAATGTAA 1428 40.2 MLSFLAAILLIISIAFVLRSTKRSRNVPPGAMGLPWIGETMVFYRAQSKNRLFEDFVEPRVAKYGKIFKTNLMGSPTVVVNGAEANRFFLSNEFKLVVSSWPSSSVQLMGEECIMQKEGEKHRCVRGLIAATLSTSSLDVMMPKLCNTIQVYLDTKWVGCDTIGLFHSAKVLTFTIVFECLLGIQVEPRVLTMFERVLEGVFAPPFRFPGTRFSRAKKARLEIETTLREVVREKRRKIEGKLEEEECGSLLSRMVRAMIGGEISEMEVIDNIVLLVFAAHDTTSFAIAMTFKMLSQHTNCYTLLLQEHTDIIRSKGPGQNLTMEDIKKMKYTWQVARESIRLFPPIFGSFRKAISDIEYESFLIPKGWKVLWTTYGTHYGEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFVHSVVTRYDWSLVHPDEPIIMDPLPVPYHGMPIKISPKSQVCSNVHQM* 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21570911 21574423 + CsaV3_6G038010.1 Csa06g02415 534042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02415 475 PRINTS P450 superfamily signature 278 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PRINTS P450 superfamily signature 334 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PRINTS P450 superfamily signature 405 414 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PRINTS P450 superfamily signature 414 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PANTHER CYTOCHROME P450 26 16 464 - -
Csa06g02415 475 Coils Coil 216 236 - -
Csa06g02415 475 SUPERFAMILY Cytochrome P450 22 464 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 16 464 - -
Csa06g02415 475 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 407 416 IPR017972 GO:0005506|GO:0016705
Csa06g02415 475 Pfam Cytochrome P450 28 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PRINTS E-class P450 group I signature 267 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PRINTS E-class P450 group I signature 373 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PRINTS E-class P450 group I signature 404 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 PRINTS E-class P450 group I signature 414 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02415 475 Gene3D Cytochrome P450 17 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02296 Csa-Chr3:20496534 Csa06g02415 Csa-Chr6:21570911 2.51E-103 dispersed
Csa06g02415 Csa-Chr6:21570911 Csa04g00509 Csa-Chr4:3345127 4.38E-72 dispersed
Csa06g02415 Csa-Chr6:21570911 Csa04g02406 Csa-Chr4:24307454 6.55E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02415 - - csv:101220115 942.184