Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02438 ATGTTGTCGAATCAGCTTCAAAATGGGATGGATAGAGCAAAAAACATGTGGTCTCTTCTTCCGAACACCGACGAAAATGAGGATGACCTTCTTAGTATCTTGAAGAAAAACGATGGGGGTGGTGTCGAAAGCCTTGATTATGAGGTTATCGAGAATTATGCTTACTGGGATGAACAGGCGCAAAGAGGGAAATTATTTGTTGGCTATAGTGTGGCAGTTAAGTGGCTGTATGCCTTGTTCATCGGTATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTTGAGAACTTTGCTGGCTGGAAATTTTCATTGACATTTGCCCTAATTCAGAAGTCATATGTGGCTGGTTTTATAGTATACTTAGCTATCAACTTGGCTCTAGTATTTTCATCCGTATATATTGTCACACACTTTGCTCCTGCGACAGCTGGATCTGGCATACCTGAAATCAAGGGATATTTGAATGGAATTGACATACACGGAGTTCTTTTCTTCAGAACCTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTAGCTTTAGGTAAAGAAGGGCCTCTTGTACACACAGGCGCATGTATTGCTTCTTTGTTAGGCCAAGGTGGATCTTCTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTCGTTACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGTAACTTCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTCACTTCTGCTGTGGTGGCTGTTGTGGTGCGTGCAGCTATGGGATGGTGTAAGAGTGGGAAATGTGGACATTTTGGCTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTCTTTTGCGGAGTTGTTGCCCATGACTGTGATTGGGGTAATTGGAGGCTTATTAGGAGCATTATTCAACCAGCTTACTCTTTATATAACATATTGGCGACGAAACCATTTACACAAGAAGGGAAACCGAGTCAAGATCATTGAGGCTTGTCTCATCTCAGTATTGACATCAATTATCTCCTTTGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAACCCGATCCGGAATTGGGAAATGAATGCCCAAGGCCTCCAGGAACATATGGGAATTATGTTAATTTTTATTGCAGCAAGGACAATGAATACAATGACCTTGCAACTATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCACGAAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTTGTGACATTTGGTACTGCAGTTCCTGCTGGCCAATTTGTTCCTGGTATAATGATTGGATCTACGTATGGACGCTTGGTTGGAAAATTTGTGGTTAGTTTCTACAAGAAGCCTAACATTGAAGAGGGAACATATGCCTTGTTGGGTGCTGCATCTTTTCTAGGAGGCTCTATGCGAATGACAGTGTCCCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTCCTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAGTTGAAGGGTATTCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCAAAGGAGGCCTGTGGAAAAAGGGTTGTCTCCTTCCCCCGTGTTGCTAAGGTTGCTGATGTTGTTAGTATTTTACGGAGCAACAGACATAATGGCTTTCCTGTGATTGATTACTCTCGAAACGGAGAGACACGTGTCATTGGACTAATGCTTAGAAGTTACTTATTAGGACTTCTACAGTCCAAAGTAGATTTTCAGCATAGTCCCTTTTCTTCTGATCCAAGAGGATCTATATCAAGCAGGCACAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATAAATCTTAGTTCAGAGGACTTGGAAATGTACATCGATCTACTTCCATATCTGAACCCATCTCCATATATTGTCCCTGAGGACATGTCTCTGACAAAGGTATATAATCTTTTCCGGCAACTAGGCCTGAGACACGCATTTGTTGTTCCCCGTCCATCAAATGTGGTTGGTTTGATTACTCGAAAGGATTTGTTGATAGAGGATAGCGAAGATTCAGATGCAATGGAACTACAATCGACTAGTAGCTCGTCGTCCAGATAG 2313 41.98 MLSNQLQNGMDRAKNMWSLLPNTDENEDDLLSILKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFVGYSVAVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLALVFSSVYIVTHFAPATAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSSKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMTVIGVIGGLLGALFNQLTLYITYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGTYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLESRPKYQMRKITAKEACGKRVVSFPRVAKVADVVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPFSSDPRGSISSRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSSSSSR* 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21758225 21765625 - CsaV3_6G038240.1 Csa06g02438 534065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02438 770 SUPERFAMILY Clc chloride channel 52 574 IPR014743 -
Csa06g02438 770 Gene3D Clc chloride channel 69 573 - -
Csa06g02438 770 Pfam CBS domain 703 749 IPR000644 -
Csa06g02438 770 Pfam CBS domain 587 643 IPR000644 -
Csa06g02438 770 Pfam Voltage gated chloride channel 130 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa06g02438 770 ProSiteProfiles CBS domain profile. 702 758 IPR000644 -
Csa06g02438 770 SMART cbs_1 705 753 IPR000644 -
Csa06g02438 770 SMART cbs_1 592 644 IPR000644 -
Csa06g02438 770 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa06g02438 770 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa06g02438 770 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa06g02438 770 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa06g02438 770 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa06g02438 770 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa06g02438 770 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Csa06g02438 770 CDD ClC_6_like 43 572 - -
Csa06g02438 770 ProSiteProfiles CBS domain profile. 589 649 IPR000644 -
Csa06g02438 770 Gene3D - 574 756 IPR046342 -
Csa06g02438 770 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 768 - -
Csa06g02438 770 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 749 - -
Csa06g02438 770 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa06g02438 770 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa06g02438 770 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa06g02438 770 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa06g02438 770 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247|GO:0006821|GO:0016020
Csa06g02438 770 SUPERFAMILY CBS-domain pair 577 749 IPR046342 -
Csa06g02438 770 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 768 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00661 Csa-Chr3:5756816 Csa06g02438 Csa-Chr6:21758225 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02438 K05016 - csv:101215989 1482.23