Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02444 ATGACGATGGCGATACCTGGGAACATTGTCGTTCTTCTTCTCCTTATGTTGCTTCTCATCCTCCTTCTCCTCCTCATTACCTGTAAACCATGGCGTTTCTTTTCATATTCCCGTTCTCGCACCATCAAGGTTCCTGACCTTGACCTTGAGAGACCCCTTGTCTCTGATGCTGCGGATGTCACTCAAAACCAATTCAGTGAGCCTCCCATTGATTATGATCTGGAGGGTGCACTTCAAACTGATGGACATTTTCGGTCCCCAAGATTACAGGGACTAATTCATAAACAAAGACTGCCACCTACATCACCCCATTCAAGTGATAGATTGGTTCAAGATGTAGTTCCCAATCCTTTAGAAGTTATTTCAGTTGGTCAAACCCTTAAACGTACTTACTTTCCGAACCAGATTCCGAACCAGATTCCAGAAGTTCAAAAGCATGCAAAACTGAGTCCGGGAAGTGAGCAACTCCACGAAATTGCAAGTCAAGATATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTCGCCTCCGGTCCTTCTCGTGGAGTTCGATATTCAATACATTCTGCAAACACATCGAGGCTCCCATTGACGCTTGGAAGAGTTCCTCAGAGTGATTTACAGCTGAAAGATTCAGAAGTTTCAGGGAAGCACGCCTTGATAAAATGGAATCTAAATAGTATGAAATGGGAGCTTGTGGACTTGGGGAGCTTAAACGGGACCTTATTAAATTCTCAACCAATTAACAATCCTGATTCTGGAAGTAGACATTGGGGTGAACCAGTCGAGCTTGCGAGTGGAGATGTTATAACTTTTGGTACAACCTCCAAAGTGTATGTTCATATTACAGCTCAGGTTGAGAACCATATTCCCTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGAGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTGCTGGGGTTGATCAGTTTGGACTCTTTGGTATCTGTGATGGACATAGTGGAGTAGCGGCTGCCAAATCTGCTAGCGAAATGCTTCCGGAGAAAGTTGCCACAATTCTATCTGATCCACTAAAAAGGGAGAGGGTAGTATCTCTTCATGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGTATGAATCACTATTACGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGGCTGATAGTGATGAAAATTATTTTGTGCAATGTGCGAATGTTGGGGACTCTGCTTGTGTTCTGAATGTTCATGGAAAGCAGATGAAGATGACAGAAGATCACAGAATAACTAGCTATTCAGAACGACTTCGAATAGAACAAGCAGGAGAACCATTGAAAGATGGAGAGACACGTTTGTGTGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTTCTTAAACAACAAGACCGTCGTTTCAGTTCAGAACCTTATATAAGTGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGTGATGGCTTTTGGGATGTGATTGGCGTGAAGAAGGCAATGCAGCTGGCCATTCAGGCTAGGGAAAGATACTCGACAAGTGCCGAAAATTCAGCCGAAAAGGTTGCGAATTTTTTGTTGGGGGAGGCTAGAACACTGCGTACAAAAGATAATACATCCATAATTTTCTTAGATTTTGAGGTTTCTAATAGAATCACTTGTAAAGTTGAACCACAATAA 1737 43.01 MTMAIPGNIVVLLLLMLLLILLLLLITCKPWRFFSYSRSRTIKVPDLDLERPLVSDAADVTQNQFSEPPIDYDLEGALQTDGHFRSPRLQGLIHKQRLPPTSPHSSDRLVQDVVPNPLEVISVGQTLKRTYFPNQIPNQIPEVQKHAKLSPGSEQLHEIASQDISHGRSYLTLEVASGPSRGVRYSIHSANTSRLPLTLGRVPQSDLQLKDSEVSGKHALIKWNLNSMKWELVDLGSLNGTLLNSQPINNPDSGSRHWGEPVELASGDVITFGTTSKVYVHITAQVENHIPFGVGLASDPMALRRGGKKLAMEDVCYYQWPLAGVDQFGLFGICDGHSGVAAAKSASEMLPEKVATILSDPLKRERVVSLHDASDVLREAFSQTEACMNHYYEGCTATVLLVWADSDENYFVQCANVGDSACVLNVHGKQMKMTEDHRITSYSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDRRFSSEPYISEVVHVDQGSKAFAVMASDGFWDVIGVKKAMQLAIQARERYSTSAENSAEKVANFLLGEARTLRTKDNTSIIFLDFEVSNRITCKVEPQ* 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21807730 21813540 - CsaV3_6G038300.1 Csa06g02444 534071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02444 578 PANTHER PROTEIN PHOSPHATASE 2C 35 576 IPR015655 GO:0004722|GO:0006470
Csa06g02444 578 Pfam FHA domain 198 273 IPR000253 GO:0005515
Csa06g02444 578 SMART FHA_2 196 248 IPR000253 GO:0005515
Csa06g02444 578 Gene3D - 300 568 IPR036457 -
Csa06g02444 578 Gene3D - 165 299 - -
Csa06g02444 578 ProSiteProfiles PPM-type phosphatase domain profile. 293 565 IPR001932 -
Csa06g02444 578 Pfam Protein phosphatase 2C 305 558 IPR001932 -
Csa06g02444 578 ProSiteProfiles Forkhead-associated (FHA) domain profile. 197 248 IPR000253 GO:0005515
Csa06g02444 578 SUPERFAMILY SMAD/FHA domain 170 281 IPR008984 GO:0005515
Csa06g02444 578 CDD PP2Cc 305 565 IPR001932 -
Csa06g02444 578 PANTHER PROTEIN PHOSPHATASE 2C 70 35 576 - -
Csa06g02444 578 SMART PP2C_4 287 563 IPR001932 -
Csa06g02444 578 CDD FHA 171 279 IPR000253 GO:0005515
Csa06g02444 578 SUPERFAMILY PP2C-like 307 565 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02444 Csa-Chr6:21807730 Csa04g02606 Csa-Chr4:25550564 3.18E-19 dispersed
Csa06g02444 Csa-Chr6:21807730 Csa03g02203 Csa-Chr3:19119262 3.32E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02444 K01090 - csv:101217195 1135.55