Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02446 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTGGTATTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGTGGCCTTGTTGAGAAGATCGGCTCTAGCATCCGTAAATCTCGAAATGGACTGTTCTCTAAGCAGTCACTCCGGGCTCTGCCTCCGGTTGCAAAGGAAGATGCGCCTCCGATTTGGTGGCGTAAGGGAGAGTTGATTGGATGTGGTGCTTTTGGTCGAGTTTATATGGGAATGAATCTCGATTCTGGAGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCTGCTAATAGTGCTTCAAGGGAGAAAGCCCAAGCTCACATACGGGAGCTGGAGGAAGAAGTGAGGCTTTTGAAGAACCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCTAGAGAGGAAGATTCATTAAATATTCTATTGGAATTTGTTCCTGGAGGATCAATATCATCTCTCTTAGGGAAATTTGGGTCTTTTCCTGAATCTGTTATAAAGACCTACACGAAGCAGCTATTATTGGGGCTTGAGTACCTTCACAAAAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCTACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTCATTGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCATATAGGGAATACCAAGTCCCATCCGCCCATTCCTGAGCATCTATCTGCTGAGGCTAAAGACTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCACGGCCTACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTACCAAGAACCTATTGCAGCAGTCCGTGCCTCTTCTATGGAATCTGGGAAACAAATGGCTGATTCTAGGCTGAACTCTAATGATCTGAAAAAGTCTACAATCCTACGTTCAACCTGTGAGGGACTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGGGTCACGGTCCAACTGGGGCTCGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGCTACTTCATCAATGAAGTACAATTCTATTATATCATCAAATGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACTTGGATGAGAGTTCAGAGTTGGGAGGCAATCTGATGGAGTTGTCCAGCGTCCAAACTGTCAAGGGGAACGACTCCACTTTTCCATGTGGTCAATCAGCAGCTGAGGATGATGAAGAGGTTACAGAATCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTCTAGAACTGAAGAAGCTCCAAACACCTTTATACGAAGAGTTCCGCAGCACAGTTAATGCAGCTAATGCCATAGGAACAGTTGGAATTGAGAATATCAAAAGTGTATCTAATTTTTTGAAATTGCCTCCCAAATGTGGATCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAGTTGATGTTGGTAACTATTCTAGCCGTCAGAGCCGTATAAAACAAGCTAGTATATTGCAAGATCGAGCTCTGCAGGAAATTCAGTCACCTCAACTTGGGGAATGGAACAAATTACTTCAAAACCAGCCAGACTCTTCCACACTAAGTTTCTCTGAAAGACAAAGGAAATGGAAAGAGGAGCTTGAGGAAGAACTTAAAAGGAAACGAGAAATGATGCGGAGAGGAATTGTAGGAGCAATTCACTAG 1911 43.59 MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKQSLRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVRLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPIAAVRASSMESGKQMADSRLNSNDLKKSTILRSTCEGLKDICEMGSLRCSSVFSGNYGSRSNWGSSNFEDDMCQIDDKDLFATSSMKYNSIISSNDLNKSFNPMCEPTDDLDESSELGGNLMELSSVQTVKGNDSTFPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTVNAANAIGTVGIENIKSVSNFLKLPPKCGSPSKLRGKRLSSVDVGNYSSRQSRIKQASILQDRALQEIQSPQLGEWNKLLQNQPDSSTLSFSERQRKWKEELEEELKRKREMMRRGIVGAIH* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21834105 21839737 - CsaV3_6G038320.1 Csa06g02446 534073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02446 636 CDD STKc_MAPKKK 65 327 - -
Csa06g02446 636 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02446 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Csa06g02446 636 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02446 636 SMART serkin_6 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02446 636 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Csa06g02446 636 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 606 - -
Csa06g02446 636 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 606 - -
Csa06g02446 636 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Csa06g02446 636 Coils Coil 606 629 - -
Csa06g02446 636 Coils Coil 98 125 - -
Csa06g02446 636 Gene3D Transferase(Phosphotransferase) domain 1 65 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00416 Csa-Chr2:2864440 Csa06g02446 Csa-Chr6:21834105 0 dispersed
Csa03g02841 Csa-Chr3:27159542 Csa06g02446 Csa-Chr6:21834105 2.03E-72 dispersed
Csa06g02446 Csa-Chr6:21834105 Csa06g02776 Csa-Chr6:24207515 2.47E-90 dispersed
Csa07g00349 Csa-Chr7:2582930 Csa06g02446 Csa-Chr6:21834105 1.68E-54 dispersed
Csa07g01108 Csa-Chr7:10703813 Csa06g02446 Csa-Chr6:21834105 7.08E-49 dispersed
Csa06g02446 Csa-Chr6:21834105 Csa06g02922 Csa-Chr6:25325579 1.44E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78392 PF00069 Pkinase 4.70E-73 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02446 - K20606 csv:101217427 1252.65