Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02465 ATGTCGGGTTCTCGACCTCCTAACTCCTCTGGACACCTTCCTGACCAGATCATGCACTCTCTTAAACGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTTCTGGGGACTATCACCGCTTCACTCCCGACTCTCGACTCGCCGATCAAGAGCCTGATGCTATCCTAGTCAAATCTCCACAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCCGAGTCAACTGATAGAGCAATTGGTCCTAGATTTGCTGAGGTAGTTAACAGTCCCCATCAAACACCTGCATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACAAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACGAACAATCTTACTCCAGCTGGTCCATGCCGTTACGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTTAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTAGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTTGACGACAATTATGCTGATCTACAGGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGACGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTACCTTGTTTCCAGAATGAAACTCTTATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTCCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGCGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTACAACAACACTAGTAACAGAGGATACTAGGGGAAAGGAAATTGAAACGCGGGAGCAAGACGTACACAGAATGTGCTCCGATCTAAATGCATCCCAGGACTTCGTGGGTGGAATTATGAAAATTGTCCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGACGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACCCAGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTACAGTATTGGCACTGTCAGCTCACCCCAAACCCAAACTCCACTTCCCAACGATGCACCTGATTTGCCTTCTACTAATCCTTCTAGTAGTTGA 1389 45.07 MSGSRPPNSSGHLPDQIMHSLKRQLPFSSMKPPFASSGDYHRFTPDSRLADQEPDAILVKSPQLKRKSEVADYEAESTDRAIGPRFAEVVNSPHQTPASVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYADLQAEVENLTMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAAEVPPSLPSSSGLNEAPTTTLVTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPSVEWNELGTFHEDYSIGTVSSPQTQTPLPNDAPDLPSTNPSSS* 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21931322 21938459 - CsaV3_6G038510.1 Csa06g02465 534092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02465 462 MobiDBLite consensus disorder prediction 92 135 - -
Csa06g02465 462 PANTHER TRANSCRIPTION FACTOR E2FB 18 452 - -
Csa06g02465 462 MobiDBLite consensus disorder prediction 434 462 - -
Csa06g02465 462 PANTHER TRANSCRIPTION FACTOR E2F 18 452 IPR015633 GO:0000978|GO:0006357
Csa06g02465 462 MobiDBLite consensus disorder prediction 27 47 - -
Csa06g02465 462 MobiDBLite consensus disorder prediction 336 354 - -
Csa06g02465 462 Gene3D - 212 322 - -
Csa06g02465 462 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Csa06g02465 462 MobiDBLite consensus disorder prediction 335 354 - -
Csa06g02465 462 Coils Coil 218 255 - -
Csa06g02465 462 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983
Csa06g02465 462 CDD E2F_DD 216 322 IPR032198 GO:0046983
Csa06g02465 462 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Csa06g02465 462 Gene3D - 134 207 IPR036388 -
Csa06g02465 462 Coils Coil 156 176 - -
Csa06g02465 462 MobiDBLite consensus disorder prediction 109 135 - -
Csa06g02465 462 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Csa06g02465 462 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00820 Csa-Chr1:5162868 Csa06g02465 Csa-Chr6:21931322 4.86E-11 dispersed
Csa02g02126 Csa-Chr2:19295233 Csa06g02465 Csa-Chr6:21931322 9.34E-78 dispersed
Csa06g02465 Csa-Chr6:21931322 Csa06g02714 Csa-Chr6:23777642 8.98E-167 dispersed
Csa06g02465 Csa-Chr6:21931322 Csa01g00185 Csa-Chr1:1197260 5.82E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32078 PF16421 E2F_CC-MB 3.10E-35 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02465 K06620 - csv:101219318 929.472