Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02465 ATGTCGGGTTCTCGACCTCCTAACTCCTCTGGACACCTTCCTGACCAGATCATGCACTCTCTTAAACGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTTCTGGGGACTATCACCGCTTCACTCCCGACTCTCGACTCGCCGATCAAGAGCCTGATGCTATCCTAGTCAAATCTCCACAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCCGAGTCAACTGATAGAGCAATTGGTCCTAGATTTGCTGAGGTAGTTAACAGTCCCCATCAAACACCTGCATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACAAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACGAACAATCTTACTCCAGCTGGTCCATGCCGTTACGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTTAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTAGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTTGACGACAATTATGCTGATCTACAGGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGACGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTACCTTGTTTCCAGAATGAAACTCTTATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTCCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGCGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTACAACAACACTAGTAACAGAGGATACTAGGGGAAAGGAAATTGAAACGCGGGAGCAAGACGTACACAGAATGTGCTCCGATCTAAATGCATCCCAGGACTTCGTGGGTGGAATTATGAAAATTGTCCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGACGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACCCAGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTACAGTATTGGCACTGTCAGCTCACCCCAAACCCAAACTCCACTTCCCAACGATGCACCTGATTTGCCTTCTACTAATCCTTCTAGTAGTTGA 1389 45.07 MSGSRPPNSSGHLPDQIMHSLKRQLPFSSMKPPFASSGDYHRFTPDSRLADQEPDAILVKSPQLKRKSEVADYEAESTDRAIGPRFAEVVNSPHQTPASVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYADLQAEVENLTMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAAEVPPSLPSSSGLNEAPTTTLVTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPSVEWNELGTFHEDYSIGTVSSPQTQTPLPNDAPDLPSTNPSSS* 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21931322 21938459 - CsaV3_6G038510.1 Csa06g02465 534092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02465 462 MobiDBLite consensus disorder prediction 92 135 - -
Csa06g02465 462 PANTHER TRANSCRIPTION FACTOR E2FB 18 452 - -
Csa06g02465 462 MobiDBLite consensus disorder prediction 434 462 - -
Csa06g02465 462 PANTHER TRANSCRIPTION FACTOR E2F 18 452 IPR015633 GO:0000978|GO:0006357
Csa06g02465 462 MobiDBLite consensus disorder prediction 27 47 - -
Csa06g02465 462 MobiDBLite consensus disorder prediction 336 354 - -
Csa06g02465 462 Gene3D - 212 322 - -
Csa06g02465 462 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Csa06g02465 462 MobiDBLite consensus disorder prediction 335 354 - -
Csa06g02465 462 Coils Coil 218 255 - -
Csa06g02465 462 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983
Csa06g02465 462 CDD E2F_DD 216 322 IPR032198 GO:0046983
Csa06g02465 462 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Csa06g02465 462 Gene3D - 134 207 IPR036388 -
Csa06g02465 462 Coils Coil 156 176 - -
Csa06g02465 462 MobiDBLite consensus disorder prediction 109 135 - -
Csa06g02465 462 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Csa06g02465 462 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02465 K06620 E2F3; transcription factor E2F3 - csv:101219318 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00820 Csa-Chr1:5162868 Csa06g02465 Csa-Chr6:21931322 4.86E-11 dispersed
Csa02g02126 Csa-Chr2:19295233 Csa06g02465 Csa-Chr6:21931322 9.34E-78 dispersed
Csa06g02465 Csa-Chr6:21931322 Csa06g02714 Csa-Chr6:23777642 8.98E-167 dispersed
Csa06g02465 Csa-Chr6:21931322 Csa01g00185 Csa-Chr1:1197260 5.82E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32078 PF16421 E2F_CC-MB 3.10E-35 No_clan Csa TF