Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02470 ATGGCGACGTACTTCCACGGTGGTTCAGAAATCCAAAACAATTCTGACGGAATTCACACTCTTTACCTTATGAACCCAAACTACGTACCTTACTCTGACACCCACTCTCAATCTTCTCATAATATGCTTTTTCTCAACCCTTCATCAACTCACGCGCTTAACCCTTCCACTCTCCCTCACCCCCCGCCTTCCAACAACCACTTCGTCGGAATTCCTCTCCCCACCACCGACCCTCTCCGTCCTTCCTATCACGAAATCTCAACAACCCTCCATCCTCATCGCCTCCACTACAATCTATGGGCTCCTGTAGACCAACAACACCAACACCACCAACAACCCCTCCATGCCGACTCCGCCGATTTGACCTTCCGTCGCCCGACAGCTCAACAGAGTTTGTCCTTAAGCCTCTCTTCCCAACAGTCTTTGTATCGGACGTTATCGGCTGAGCAGGAGATACAAGGCGGTGGCGGAGGCGGAGGCGGTGGCGGTGGTGCTCCGAGTGGGGAGGAAATTCGGGTGTCAGGGAATTCGGGGACGTCGGTGTCGGTGGTGTCGAGTGGGATAACGGGGGTTCAGAGTGTGATATTGGGGTCTAAGTATTTGAAAGCGGCTCAAGAACTTTTGGATGAAGTAGTTCATGTTGGTAAAGCAAATTTTAAAACCGACAAATTTGGGGATGGGACAAAGGATAAGATGAAGATGAAGAGAGAATCAACGACTACCATTGGTGGAGGTTCTTCCGCCACCACCGGTGGCGGTGAAACTACTTCCAAGTCTGTTGCTGAGCTTAGTACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCTAAGCTTATTGGAATGCTTGATGAGGTGGAGCAGAAGTATAAACAATACCACCAACAAATACGAGGAGTAGTGAGTTGTTTCGAGCAAGCAGCAGGTTTGGGGTCAGCGAAATCGTACGCATCACTGGCCCTCGAAACGATTTCAAAGCAGTTCAGGTGCTTAAAAGATGCAATATGTGGACAAATCAAAGCAACAGGAAAAAGCTTAGGAGAAGATCAAGAGAATTGGTTGGGTTCGTCAAAAATGGAAGGATCATCAACAACATCATCATCAAGATTGAGATATGTCGATCATCATTTAAGGCAACAAAGAGCCCTTCAACAATTGGGAATGATTCAACATAATACTTGGAGACCTCAAAGAGGTTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACATTTCCTTCACCCGTATCCTAAGGATTCTGATAAGATCATTCTTGCTAAACAAACTGGTCTCACAAGAAGCCAAGTATCAAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAGGAAATGTATTTGGAGGAAATCAAAGAGCAAGAGCAAAATGGGGATTCCCAAGACATGATTAGAGGAGGAGGATCACAACATCAAAATAACAACAACAATAATCGTACTCATAATGATCCACAGTATTCCAAGACAGAAAATTTGATGAACAACAACCCTTCCCATTCTTCGATCTCATCCTCCTCAATCTTAGGAATAGGATCGACAACCGTGGGTGGCGGTTTCAGCCTCGTACCACCGTCCTCTGACAATAACATCCTCCTTTCAACTCCCAAAAAACCAAGAACAACCACTACCACCGCCGCCATCACGACGACAAACAACAACAACAACGTTGTCTCAGAAAACCCTTCCTCAGAATCCATGCTTCTAAGAGACATTGATATTGTTAATTCCAACTCATTCCCAGTTGGTGAAATTGGATCAACTTTCAATTCAGAGCTTTTAACTCCAAGGTTTCATGCAAATGGTGTCTCTCTCACTCTTGCCCTTCCTCATAACAATTCAGATCATCTCTCACTTTCACCCAACCAAACAAATTACCATCATCTCTCTTCCAACCAAAACCTTCACTTAGGTAGATCATCAAGGCTTGATATCACCAATCATCATCCTGGACCACCCGATTTCTCCGACGTCAATCCCACTGCCCCGCCCTCCTACGACCACGTCGATATGCAAACCACCAAAAGGTTCGCCGCCCAGTTATTGCCTGATTTTGTTGCATGA 2097 45.68 MATYFHGGSEIQNNSDGIHTLYLMNPNYVPYSDTHSQSSHNMLFLNPSSTHALNPSTLPHPPPSNNHFVGIPLPTTDPLRPSYHEISTTLHPHRLHYNLWAPVDQQHQHHQQPLHADSADLTFRRPTAQQSLSLSLSSQQSLYRTLSAEQEIQGGGGGGGGGGGAPSGEEIRVSGNSGTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVHVGKANFKTDKFGDGTKDKMKMKRESTTTIGGGSSATTGGGETTSKSVAELSTAQRQDLQMKKAKLIGMLDEVEQKYKQYHQQIRGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICGQIKATGKSLGEDQENWLGSSKMEGSSTTSSSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSQDMIRGGGSQHQNNNNNNRTHNDPQYSKTENLMNNNPSHSSISSSSILGIGSTTVGGGFSLVPPSSDNNILLSTPKKPRTTTTTAAITTTNNNNNVVSENPSSESMLLRDIDIVNSNSFPVGEIGSTFNSELLTPRFHANGVSLTLALPHNNSDHLSLSPNQTNYHHLSSNQNLHLGRSSRLDITNHHPGPPDFSDVNPTAPPSYDHVDMQTTKRFAAQLLPDFVA* 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21978294 21983356 + CsaV3_6G038560.1 Csa06g02470 534097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02470 698 MobiDBLite consensus disorder prediction 472 516 - -
Csa06g02470 698 SMART prehox3 189 336 IPR006563 -
Csa06g02470 698 CDD homeodomain 393 454 IPR001356 GO:0003677
Csa06g02470 698 ProSiteProfiles 'Homeobox' domain profile. 390 453 IPR001356 GO:0003677
Csa06g02470 698 SMART HOX_1 393 457 IPR001356 GO:0003677
Csa06g02470 698 MobiDBLite consensus disorder prediction 151 179 - -
Csa06g02470 698 Gene3D - 396 474 - -
Csa06g02470 698 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 649 - -
Csa06g02470 698 MobiDBLite consensus disorder prediction 465 516 - -
Csa06g02470 698 Pfam Homeobox KN domain 410 449 IPR008422 GO:0003677|GO:0006355
Csa06g02470 698 Pfam Associated with HOX 194 334 IPR006563 -
Csa06g02470 698 MobiDBLite consensus disorder prediction 653 674 - -
Csa06g02470 698 SUPERFAMILY Homeodomain-like 394 459 IPR009057 -
Csa06g02470 698 MobiDBLite consensus disorder prediction 233 257 - -
Csa06g02470 698 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 649 - -
Csa06g02470 698 MobiDBLite consensus disorder prediction 239 257 - -
Csa06g02470 698 Coils Coil 268 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01843 Csa-Chr2:17613594 Csa06g02470 Csa-Chr6:21978294 2.79E-43 dispersed
Csa06g02470 Csa-Chr6:21978294 Csa07g02163 Csa-Chr7:20537174 9.49E-82 dispersed
Csa06g02874 Csa-Chr6:25012164 Csa06g02470 Csa-Chr6:21978294 8.10E-83 transposed
Csa03g03494 Csa-Chr3:31283814 Csa06g02470 Csa-Chr6:21978294 8.73E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32079 PF07526 POX 3.60E-45 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02470 - - csv:101220747 1221.84