Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02470 | ATGGCGACGTACTTCCACGGTGGTTCAGAAATCCAAAACAATTCTGACGGAATTCACACTCTTTACCTTATGAACCCAAACTACGTACCTTACTCTGACACCCACTCTCAATCTTCTCATAATATGCTTTTTCTCAACCCTTCATCAACTCACGCGCTTAACCCTTCCACTCTCCCTCACCCCCCGCCTTCCAACAACCACTTCGTCGGAATTCCTCTCCCCACCACCGACCCTCTCCGTCCTTCCTATCACGAAATCTCAACAACCCTCCATCCTCATCGCCTCCACTACAATCTATGGGCTCCTGTAGACCAACAACACCAACACCACCAACAACCCCTCCATGCCGACTCCGCCGATTTGACCTTCCGTCGCCCGACAGCTCAACAGAGTTTGTCCTTAAGCCTCTCTTCCCAACAGTCTTTGTATCGGACGTTATCGGCTGAGCAGGAGATACAAGGCGGTGGCGGAGGCGGAGGCGGTGGCGGTGGTGCTCCGAGTGGGGAGGAAATTCGGGTGTCAGGGAATTCGGGGACGTCGGTGTCGGTGGTGTCGAGTGGGATAACGGGGGTTCAGAGTGTGATATTGGGGTCTAAGTATTTGAAAGCGGCTCAAGAACTTTTGGATGAAGTAGTTCATGTTGGTAAAGCAAATTTTAAAACCGACAAATTTGGGGATGGGACAAAGGATAAGATGAAGATGAAGAGAGAATCAACGACTACCATTGGTGGAGGTTCTTCCGCCACCACCGGTGGCGGTGAAACTACTTCCAAGTCTGTTGCTGAGCTTAGTACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCTAAGCTTATTGGAATGCTTGATGAGGTGGAGCAGAAGTATAAACAATACCACCAACAAATACGAGGAGTAGTGAGTTGTTTCGAGCAAGCAGCAGGTTTGGGGTCAGCGAAATCGTACGCATCACTGGCCCTCGAAACGATTTCAAAGCAGTTCAGGTGCTTAAAAGATGCAATATGTGGACAAATCAAAGCAACAGGAAAAAGCTTAGGAGAAGATCAAGAGAATTGGTTGGGTTCGTCAAAAATGGAAGGATCATCAACAACATCATCATCAAGATTGAGATATGTCGATCATCATTTAAGGCAACAAAGAGCCCTTCAACAATTGGGAATGATTCAACATAATACTTGGAGACCTCAAAGAGGTTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACATTTCCTTCACCCGTATCCTAAGGATTCTGATAAGATCATTCTTGCTAAACAAACTGGTCTCACAAGAAGCCAAGTATCAAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAGGAAATGTATTTGGAGGAAATCAAAGAGCAAGAGCAAAATGGGGATTCCCAAGACATGATTAGAGGAGGAGGATCACAACATCAAAATAACAACAACAATAATCGTACTCATAATGATCCACAGTATTCCAAGACAGAAAATTTGATGAACAACAACCCTTCCCATTCTTCGATCTCATCCTCCTCAATCTTAGGAATAGGATCGACAACCGTGGGTGGCGGTTTCAGCCTCGTACCACCGTCCTCTGACAATAACATCCTCCTTTCAACTCCCAAAAAACCAAGAACAACCACTACCACCGCCGCCATCACGACGACAAACAACAACAACAACGTTGTCTCAGAAAACCCTTCCTCAGAATCCATGCTTCTAAGAGACATTGATATTGTTAATTCCAACTCATTCCCAGTTGGTGAAATTGGATCAACTTTCAATTCAGAGCTTTTAACTCCAAGGTTTCATGCAAATGGTGTCTCTCTCACTCTTGCCCTTCCTCATAACAATTCAGATCATCTCTCACTTTCACCCAACCAAACAAATTACCATCATCTCTCTTCCAACCAAAACCTTCACTTAGGTAGATCATCAAGGCTTGATATCACCAATCATCATCCTGGACCACCCGATTTCTCCGACGTCAATCCCACTGCCCCGCCCTCCTACGACCACGTCGATATGCAAACCACCAAAAGGTTCGCCGCCCAGTTATTGCCTGATTTTGTTGCATGA | 2097 | 45.68 | MATYFHGGSEIQNNSDGIHTLYLMNPNYVPYSDTHSQSSHNMLFLNPSSTHALNPSTLPHPPPSNNHFVGIPLPTTDPLRPSYHEISTTLHPHRLHYNLWAPVDQQHQHHQQPLHADSADLTFRRPTAQQSLSLSLSSQQSLYRTLSAEQEIQGGGGGGGGGGGAPSGEEIRVSGNSGTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVHVGKANFKTDKFGDGTKDKMKMKRESTTTIGGGSSATTGGGETTSKSVAELSTAQRQDLQMKKAKLIGMLDEVEQKYKQYHQQIRGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICGQIKATGKSLGEDQENWLGSSKMEGSSTTSSSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSQDMIRGGGSQHQNNNNNNRTHNDPQYSKTENLMNNNPSHSSISSSSILGIGSTTVGGGFSLVPPSSDNNILLSTPKKPRTTTTTAAITTTNNNNNVVSENPSSESMLLRDIDIVNSNSFPVGEIGSTFNSELLTPRFHANGVSLTLALPHNNSDHLSLSPNQTNYHHLSSNQNLHLGRSSRLDITNHHPGPPDFSDVNPTAPPSYDHVDMQTTKRFAAQLLPDFVA* | 699 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 21978294 | 21983356 | + | CsaV3_6G038560.1 | Csa06g02470 | 534097 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02470 | 698 | MobiDBLite | consensus disorder prediction | 472 | 516 | - | - | |
Csa06g02470 | 698 | SMART | prehox3 | 189 | 336 | IPR006563 | - | |
Csa06g02470 | 698 | CDD | homeodomain | 393 | 454 | IPR001356 | GO:0003677 | |
Csa06g02470 | 698 | ProSiteProfiles | 'Homeobox' domain profile. | 390 | 453 | IPR001356 | GO:0003677 | |
Csa06g02470 | 698 | SMART | HOX_1 | 393 | 457 | IPR001356 | GO:0003677 | |
Csa06g02470 | 698 | MobiDBLite | consensus disorder prediction | 151 | 179 | - | - | |
Csa06g02470 | 698 | Gene3D | - | 396 | 474 | - | - | |
Csa06g02470 | 698 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 6 | 649 | - | - | |
Csa06g02470 | 698 | MobiDBLite | consensus disorder prediction | 465 | 516 | - | - | |
Csa06g02470 | 698 | Pfam | Homeobox KN domain | 410 | 449 | IPR008422 | GO:0003677|GO:0006355 | |
Csa06g02470 | 698 | Pfam | Associated with HOX | 194 | 334 | IPR006563 | - | |
Csa06g02470 | 698 | MobiDBLite | consensus disorder prediction | 653 | 674 | - | - | |
Csa06g02470 | 698 | SUPERFAMILY | Homeodomain-like | 394 | 459 | IPR009057 | - | |
Csa06g02470 | 698 | MobiDBLite | consensus disorder prediction | 233 | 257 | - | - | |
Csa06g02470 | 698 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 5 | 6 | 649 | - | - | |
Csa06g02470 | 698 | MobiDBLite | consensus disorder prediction | 239 | 257 | - | - | |
Csa06g02470 | 698 | Coils | Coil | 268 | 295 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01843 | Csa-Chr2:17613594 | Csa06g02470 | Csa-Chr6:21978294 | 2.79E-43 | dispersed | |
Csa06g02470 | Csa-Chr6:21978294 | Csa07g02163 | Csa-Chr7:20537174 | 9.49E-82 | dispersed | |
Csa06g02874 | Csa-Chr6:25012164 | Csa06g02470 | Csa-Chr6:21978294 | 8.10E-83 | transposed | |
Csa03g03494 | Csa-Chr3:31283814 | Csa06g02470 | Csa-Chr6:21978294 | 8.73E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32079 | PF07526 | POX | 3.60E-45 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02470 | - | - | csv:101220747 | 1221.84 |