Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02471 ATGAAAATGGAAGATCATTTAGAAGAAAATGGTGAAATTGAAGTCCCTTCCTATTTCCTTTGTCCAATTTCCCTTCAACTCATGAGAGATCCAGTCACTATCTCCACCGGTATCACTTACGATCGTTCCAGCATTGAAATGTGGCTTTTTTCATTCAACAAAACTGTTTGTCCCATTACTAAGCAACCCTTATCATCCGATCCTGATTTACTTACCCCCAATCATACTCTTCGTCGTTTGATTCAATCTTGGTGTACGCTCAATGCTTCTAATGGAATTGAAAGAATTCCAACTCCAAAGTCTCCTATTGACAAAACCCATATTGCCAAAATCCTTAAACAAGCTCAAAGTTTCCCTGATTCCACCCATAAATGTCTCCTTGCTCTTAAAGCTATTGCCTTGGAGAATGAGAGAAATCGCAATCTTGTGGCTCAATCTGATGGGGCTTTTGATTTTCTAGCTATGGTTATCAAGAGTGGTGGTAGTAATAATATTGCTTCTATTGAGTTAGCTGTGGAAATTCTCTTTCATATCAAATCCTCTCAAACCCATCTCAAGAATCTCGTAAATGGTGATGTTGATTTTATTAACTCTCTTACTTTTGTTCTGCAAAATGGGAATTGTCAATCTAGAGCTTACGCGGTAATGTTGCTTAAATCAAGCTTGGAACTTGCTGATCCAATTCGTTTGATGAGTATTGAGAGGGAACTTCTTAGAGAAATTGTTCGTGTGATCCATGATCATATTTCTCATCAAGCATCGAAATCGGCGTTGAAGGTTCTCGCTGAGGTTTGTCCGTGGGGGAGGAATCGTGTGAAGGCAGTCGAGGGTGGTGCAGTTGGGGTGTTAGTGGAGTTGCTTCTGAATTCGACCGAGAGGCGGTGGTCGGAGTTAGGATTGGTGATTCTGGATCAGCTTTGCGGGTGTGCGGAGGGGCGGGAGAAGCTCGTGGCACATGCGGCTGGGCTTGCGGTTGTGTCTAAGAAAATACTTAGGGTTTCGGCCATGGCGAGTGATCGTGCAGTGAGGATATTGTCATCGATTTGTCGGTTTTCGGCATCGGCGAAAGTGATGCAAGAAATGTTGGAGGTTGGGGTGGTGGCAAAGCTGTGTTTAGTATTGCAAATGGATTGTAGTATGAAGACAAGGGAGAAGGCAAGAGATACACTAAAGTTGCATTCTAGGGTTTGGAGTAATTCTTCTTGTATTCCTCCACATTTGTTGTCTGCTTATCCATCCACTTGA 1245 42.65 MKMEDHLEENGEIEVPSYFLCPISLQLMRDPVTISTGITYDRSSIEMWLFSFNKTVCPITKQPLSSDPDLLTPNHTLRRLIQSWCTLNASNGIERIPTPKSPIDKTHIAKILKQAQSFPDSTHKCLLALKAIALENERNRNLVAQSDGAFDFLAMVIKSGGSNNIASIELAVEILFHIKSSQTHLKNLVNGDVDFINSLTFVLQNGNCQSRAYAVMLLKSSLELADPIRLMSIERELLREIVRVIHDHISHQASKSALKVLAEVCPWGRNRVKAVEGGAVGVLVELLLNSTERRWSELGLVILDQLCGCAEGREKLVAHAAGLAVVSKKILRVSAMASDRAVRILSSICRFSASAKVMQEMLEVGVVAKLCLVLQMDCSMKTREKARDTLKLHSRVWSNSSCIPPHLLSAYPST* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21988228 21989880 - CsaV3_6G038570.1 Csa06g02471 534098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02471 414 SUPERFAMILY RING/U-box 10 88 - -
Csa06g02471 414 SMART Ubox_2 18 84 IPR003613 GO:0004842|GO:0016567
Csa06g02471 414 ProSiteProfiles U-box domain profile. 14 91 IPR003613 GO:0004842|GO:0016567
Csa06g02471 414 PANTHER OS11G0573500 PROTEIN 14 412 - -
Csa06g02471 414 Gene3D - 106 401 IPR011989 -
Csa06g02471 414 CDD RING-Ubox_PUB 19 62 IPR045210 -
Csa06g02471 414 Pfam U-box domain 15 86 IPR003613 GO:0004842|GO:0016567
Csa06g02471 414 PANTHER WDSAM1 PROTEIN 14 412 IPR045185 GO:0061630
Csa06g02471 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Csa06g02471 414 SUPERFAMILY ARM repeat 187 391 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03268 Csa-Chr1:28933446 Csa06g02471 Csa-Chr6:21988228 8.36E-97 dispersed
Csa04g01150 Csa-Chr4:9818244 Csa06g02471 Csa-Chr6:21988228 4.18E-130 dispersed
Csa06g00650 Csa-Chr6:5405955 Csa06g02471 Csa-Chr6:21988228 1.23E-50 dispersed
Csa02g01627 Csa-Chr2:15446800 Csa06g02471 Csa-Chr6:21988228 1.65E-34 transposed
Csa03g04556 Csa-Chr3:39679441 Csa06g02471 Csa-Chr6:21988228 2.97E-09 transposed
Csa05g01122 Csa-Chr5:11451621 Csa06g02471 Csa-Chr6:21988228 2.27E-58 transposed
Csa03g03495 Csa-Chr3:31295374 Csa06g02471 Csa-Chr6:21988228 4.13E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02471 - - csv:101203877 807.364