Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02479 ATGTCACTGGACATGATGGCTTCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACATTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTTTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCTCAACAGGGTCATAAACAACAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTACCAAATCCACCAAAATTGGTTCTCTTGATTCTTCTGCAGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAACGTGTTCCATCGGCATATAATAGGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATAAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAATTGGATGGAAATAAGCAAACAAAATAA 522 41.57 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSTKSTKIGSLDSSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22073762 22079927 - CsaV3_6G038650.1 Csa06g02479 534106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02479 173 MobiDBLite consensus disorder prediction 58 95 - -
Csa06g02479 173 MobiDBLite consensus disorder prediction 58 121 - -
Csa06g02479 173 MobiDBLite consensus disorder prediction 96 113 - -
Csa06g02479 173 CDD HMGB-UBF_HMG-box 118 154 - -
Csa06g02479 173 Gene3D High mobility group box domain 109 160 IPR036910 -
Csa06g02479 173 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 173 - -
Csa06g02479 173 SUPERFAMILY HMG-box 109 157 IPR036910 -
Csa06g02479 173 Pfam YABBY protein 7 164 IPR006780 GO:0007275
Csa06g02479 173 PANTHER PROTEIN YABBY 6-RELATED 6 173 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02479 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101222154 338.961
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02026 Csa-Chr1:17106850 Csa06g02479 Csa-Chr6:22073762 1.05E-59 dispersed
Csa03g00304 Csa-Chr3:2578889 Csa06g02479 Csa-Chr6:22073762 8.82E-52 dispersed
Csa05g00395 Csa-Chr5:2561275 Csa06g02479 Csa-Chr6:22073762 3.53E-57 dispersed
Csa05g02325 Csa-Chr5:25681639 Csa06g02479 Csa-Chr6:22073762 6.78E-38 dispersed
Csa05g02521 Csa-Chr5:26755968 Csa06g02479 Csa-Chr6:22073762 4.25E-38 dispersed
Csa06g02479 Csa-Chr6:22073762 Csa02g01755 Csa-Chr2:17137021 4.41E-34 dispersed
Csa06g02479 Csa-Chr6:22073762 Csa02g00197 Csa-Chr2:1351623 4.69E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02521 . 3 172 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 1.7e-44 176.0
Csa05g00395 CCT 88 249 C2C2-YABBY Transcription Factor Family AT2G45190 59.4 7.1e-42 167.2
Csa06g02479 . 1 173 C2C2-YABBY Transcription Factor Family AT1G08465 67.4 1.3e-57 219.5
Csa01g02026 . 6 181 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 3.8e-44 174.9
Csa05g00395 CCT 44 238 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.9e-43 172.6
Csa02g00197 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.3e-41 165.6
Csa03g00304 CCT 18 182 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.4e-38 155.6
Csa05g00395 CCT 55 247 C2C2-YABBY Transcription Factor Family AT4G00180 55.7 6.9e-50 194.1
Csa05g02325 . 19 183 C2C2-YABBY Transcription Factor Family AT1G23420 55.4 1.1e-41 167.2
Csa01g02026 . 8 177 C2C2-YABBY Transcription Factor Family AT2G26580 69.4 1.4e-61 232.6
Csa02g00197 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 2.3e-61 231.9
Csa06g02479 . 1 173 C2C2-YABBY Transcription Factor Family AT2G26580 60.7 9.2e-50 193.4
Csa05g00395 CCT 46 209 C2C2-YABBY Transcription Factor Family AT2G26580 55.4 1.2e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32080 PF04690 YABBY 2.30E-75 CL0114 Csa TF