Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02479 ATGTCACTGGACATGATGGCTTCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACATTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTTTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCTCAACAGGGTCATAAACAACAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTACCAAATCCACCAAAATTGGTTCTCTTGATTCTTCTGCAGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAACGTGTTCCATCGGCATATAATAGGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATAAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAATTGGATGGAAATAAGCAAACAAAATAA 522 41.57 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSTKSTKIGSLDSSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22073762 22079927 - CsaV3_6G038650.1 Csa06g02479 534106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02479 173 MobiDBLite consensus disorder prediction 58 95 - -
Csa06g02479 173 MobiDBLite consensus disorder prediction 58 121 - -
Csa06g02479 173 MobiDBLite consensus disorder prediction 96 113 - -
Csa06g02479 173 CDD HMGB-UBF_HMG-box 118 154 - -
Csa06g02479 173 Gene3D High mobility group box domain 109 160 IPR036910 -
Csa06g02479 173 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 173 - -
Csa06g02479 173 SUPERFAMILY HMG-box 109 157 IPR036910 -
Csa06g02479 173 Pfam YABBY protein 7 164 IPR006780 GO:0007275
Csa06g02479 173 PANTHER PROTEIN YABBY 6-RELATED 6 173 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02026 Csa-Chr1:17106850 Csa06g02479 Csa-Chr6:22073762 1.05E-59 dispersed
Csa03g00304 Csa-Chr3:2578889 Csa06g02479 Csa-Chr6:22073762 8.82E-52 dispersed
Csa05g00395 Csa-Chr5:2561275 Csa06g02479 Csa-Chr6:22073762 3.53E-57 dispersed
Csa05g02325 Csa-Chr5:25681639 Csa06g02479 Csa-Chr6:22073762 6.78E-38 dispersed
Csa05g02521 Csa-Chr5:26755968 Csa06g02479 Csa-Chr6:22073762 4.25E-38 dispersed
Csa06g02479 Csa-Chr6:22073762 Csa02g01755 Csa-Chr2:17137021 4.41E-34 dispersed
Csa06g02479 Csa-Chr6:22073762 Csa02g00197 Csa-Chr2:1351623 4.69E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32080 PF04690 YABBY 2.30E-75 CL0114 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02479 K25796 - csv:101222154 338.961